Table 1 Top 20 3D gene clusters with smallest p-value using intrachromosomal Hi-C data
From: GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data
Name | Genes | Penalty | p-Value |
|---|---|---|---|
HOXC ∗ | HOTAIR_2, HOTAIR_3, HOXC10, HOXC11, HOXC12, HOXC13, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9 | 0.006 | 1·10−7 |
OR | OR5AP2, OR5AR1, OR5M1, OR5M10, OR5M11, OR5M3, OR5M8, OR5M9, OR5R1, OR8K1, OR8U1, OR9G1, OR9G | 0 | 1·10−7 |
IGHV ∗ | IGHV3-11, IGHV3-13, IGHV3-20, IGHV3-21, IGHV3-23, IGHV3-30, IGHV3-33, IGHV3-35, IGHV3-64D, IGHV3-7 | 0 | 1·10−7 |
KRTAP ∗ | KRTAP13-1, KRTAP13-2, KRTAP13-3, KRTAP13-4, KRTAP15-1, KRTAP24-1, KRTAP26-1, KRTAP27-1 | 0 | 1·10−7 |
TAS2R | TAS2R14, TAS2R19, TAS2R20, TAS2R31, TAS2R46, TAS2R50 | 0 | 3.70·10−6 |
OR | OR2A12, OR2A14, OR2A25, OR2A5 | 0 | 9.09·10−5 |
ZSCAN4 | NKAPL, ZKSCAN3, ZKSCAN4, ZSCAN26 | 0.006 | 0.00015 |
TRAV | TRAV12-1, TRAV12-2, TRAV12-3, TRAV13-1, TRAV13-2, TRAV17, TRAV18, TRAV19, TRAV22, TRAV23DV6, TRAV5, TRAV8-1, TRAV8-3, TRAV9-2 | 0 | 0.00037 |
OR | OR5AC1, OR5H1, OR5H14 | 0 | 0.00037 |
IGHV + | IGHV1-18, IGHV1-24, IGHV1-3 | 0 | 0.00037 |
BTN3 + | BTN3A1, BTN3A2, BTN3A3 | 0 | 0.00037 |
(unnamed) | GTF2A1L, STON1, STON1-GTF2A1L | 0 | 0.00037 |
CYP3A | CYP3A4, CYP3A43, CYP3A5, CYP3A7, CYP3A7-CYP3A51P | 0.028 | 0.00037 |
(unnamed) | ADGRE1, C3, CD70, GPR108, TNFSF14, TRIP10, VAV1 | 0.057 | 0.00047 |
ZNF | CCDC106, FIZ1, U2AF2, ZNF524, ZNF580, ZNF784, ZNF865 | 0.097 | 0.00110 |
OR | OR8B12, OR8B4, OR8B8 | 0.012 | 0.00376 |
KIR | KIR2DL1, KIR2DL3, KIR2DL4, KIR2DS4, KIR3DL1, KIR3DL2, KIR3DL3 | 0.179 | 0.00243 |
MMP | MMP12, MMP13, MMP3 | 0.035 | 0.00486 |
TSPY + | TSPYL1, TSPYL4 | 0 | 0.00504 |
SIGLEC + | SIGLEC12, SIGLEC8 | 0 | 0.00504 |