Fig. 2
From: TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets
Finding the expected motif with TrawlerWeb, RSAT peak-motifs, and MEME-ChIP. Alignment of the closest primary (no.1) and secondary (no.2) motif to the expected binding site identified for each motif discovery tool for the five species a Danio rerio, b Arabidopsis thaliana, c Mus musculus, d Drosophila melanogaster, and e Homo sapiens. f For each tool, Similarity Distance of the closest primary (no.1) and secondary (no.2) motif to the expected binding site. Motifs of 6 nucleotides (nt) length were represented for Su(H) and Sox15.1, and 7Â nt for MEF2A, TOC1, and Zic3.2. MEME did not find any motif for Zic3.2, motif found by DREME was used