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Fig. 2 | BMC Genomics

Fig. 2

From: A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample

Fig. 2

Methylkit Pearson correlation coefficient computations to compare methylation and SNPs between split and non-split samples. Figures demonstrate comparisons of methylation levels across the bisulphite and non-bisulphite treated samples at positions that are associated with a sub-genome A b sub-genome B and c sub-genome D. Comparisons of SNPs using allele frequencies were also computed for the same comparisons and are shown for SNPs in d sub-genome A e sub-genome B and f sub-genome D. Individual samples are labeled diagonally with an axis through the middle of the plot that acts as a mirror image division; comparative correlation plots lie to the left of the axis at the intersection between the two samples, with the corresponding correlation co-efficient for the plot to the left of the axis at the intersection between the two samples

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