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Table 2 Differential upregulation of monolignol biosynthetic genes ≥ two-fold in stem sections of B. napus DH12075 (DH) and YN01–429 (YN)

From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content

Probe name Upregulated expression Corresponding Arabidopsis Loci Description
DH4:YN4 DH1:YN1 DH4:DH1 YN4:YN1
BN18476   2.04   2.13 AT1G09500 Similar to Eucalyptus gunnii alcohol dehydrogenase
BN10302 3.64 4.25    AT1G12840 De-etiolated 3 (DET3)
BN21410 BN21411 6.45 2.18   2.25 AT1G15950 Cinnamoyl CoA reductase (CCR1)
BN26995     2.27 AT1G33030 O-methyltransferase family 2 protein
BN17817    2.54   AT1G67980 Caffeoyl-CoA 3-O-methyltransferase
BN24319 BN24320    2.43   AT1G77520 O-methyltransferase family 2 protein
BN23842   2.5    AT1G80820 Cinnamoyl CoA reductase (CCR2)
BN25563   2.14   2.19 AT2G02400 Cinnamoyl-CoA reductase family
BN15586 8.73 2.64    AT2G40890 Coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase (CYP98A3)
BN26731 2.99     AT2G33600 Cinnamoyl-CoA reductase family
BN14781
BN14782 BN14783
8.79 4.72 2.9   AT3G17390 S-Adenosylmethionine synthetase 3 (SAMS3)
BN22074 4.24     AT3G19450 Cinnamyl-Alcohol Dehydrogenase (CAD4)
BN18533 BN18534 3.09   3.51 2.48 AT4G36220 Ferulic acid 5-hydroxylase 1 (FAH1)
BN13060    2.18   AT5G14700 Cinnamoyl-CoA reductase-related
BN19086 BN19087 3.0    3.26 AT5G48930 Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT)
BN13706 5.22 5.01    AT5G54160 Caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1)
BN20498 2.49     AT5G58490 Cinnamoyl-CoA reductase family