Table 2 Differential upregulation of monolignol biosynthetic genes ≥ two-fold in stem sections of B. napus DH12075 (DH) and YN01–429 (YN)
From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content
Probe name | Upregulated expression | Corresponding Arabidopsis Loci | Description | |||
|---|---|---|---|---|---|---|
DH4:YN4 | DH1:YN1 | DH4:DH1 | YN4:YN1 | |||
BN18476 | Â | 2.04 | Â | 2.13 | AT1G09500 | Similar to Eucalyptus gunnii alcohol dehydrogenase |
BN10302 | 3.64 | 4.25 | Â | Â | AT1G12840 | De-etiolated 3 (DET3) |
BN21410 BN21411 | 6.45 | 2.18 | Â | 2.25 | AT1G15950 | Cinnamoyl CoA reductase (CCR1) |
BN26995 | Â | Â | Â | 2.27 | AT1G33030 | O-methyltransferase family 2 protein |
BN17817 | Â | Â | 2.54 | Â | AT1G67980 | Caffeoyl-CoA 3-O-methyltransferase |
BN24319 BN24320 | Â | Â | 2.43 | Â | AT1G77520 | O-methyltransferase family 2 protein |
BN23842 | Â | 2.5 | Â | Â | AT1G80820 | Cinnamoyl CoA reductase (CCR2) |
BN25563 | Â | 2.14 | Â | 2.19 | AT2G02400 | Cinnamoyl-CoA reductase family |
BN15586 | 8.73 | 2.64 | Â | Â | AT2G40890 | Coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase (CYP98A3) |
BN26731 | 2.99 | Â | Â | Â | AT2G33600 | Cinnamoyl-CoA reductase family |
BN14781 BN14782 BN14783 | 8.79 | 4.72 | 2.9 | Â | AT3G17390 | S-Adenosylmethionine synthetase 3 (SAMS3) |
BN22074 | 4.24 | Â | Â | Â | AT3G19450 | Cinnamyl-Alcohol Dehydrogenase (CAD4) |
BN18533 BN18534 | 3.09 | Â | 3.51 | 2.48 | AT4G36220 | Ferulic acid 5-hydroxylase 1 (FAH1) |
BN13060 | Â | Â | 2.18 | Â | AT5G14700 | Cinnamoyl-CoA reductase-related |
BN19086 BN19087 | 3.0 | Â | Â | 3.26 | AT5G48930 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT) |
BN13706 | 5.22 | 5.01 | Â | Â | AT5G54160 | Caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1) |
BN20498 | 2.49 | Â | Â | Â | AT5G58490 | Cinnamoyl-CoA reductase family |