Skip to main content

Table 2 Differential upregulation of monolignol biosynthetic genes ≥ two-fold in stem sections of B. napus DH12075 (DH) and YN01–429 (YN)

From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content

Probe name Upregulated expression Corresponding Arabidopsis Loci Description
BN18476   2.04   2.13 AT1G09500 Similar to Eucalyptus gunnii alcohol dehydrogenase
BN10302 3.64 4.25    AT1G12840 De-etiolated 3 (DET3)
BN21410 BN21411 6.45 2.18   2.25 AT1G15950 Cinnamoyl CoA reductase (CCR1)
BN26995     2.27 AT1G33030 O-methyltransferase family 2 protein
BN17817    2.54   AT1G67980 Caffeoyl-CoA 3-O-methyltransferase
BN24319 BN24320    2.43   AT1G77520 O-methyltransferase family 2 protein
BN23842   2.5    AT1G80820 Cinnamoyl CoA reductase (CCR2)
BN25563   2.14   2.19 AT2G02400 Cinnamoyl-CoA reductase family
BN15586 8.73 2.64    AT2G40890 Coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase (CYP98A3)
BN26731 2.99     AT2G33600 Cinnamoyl-CoA reductase family
BN14782 BN14783
8.79 4.72 2.9   AT3G17390 S-Adenosylmethionine synthetase 3 (SAMS3)
BN22074 4.24     AT3G19450 Cinnamyl-Alcohol Dehydrogenase (CAD4)
BN18533 BN18534 3.09   3.51 2.48 AT4G36220 Ferulic acid 5-hydroxylase 1 (FAH1)
BN13060    2.18   AT5G14700 Cinnamoyl-CoA reductase-related
BN19086 BN19087 3.0    3.26 AT5G48930 Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT)
BN13706 5.22 5.01    AT5G54160 Caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1)
BN20498 2.49     AT5G58490 Cinnamoyl-CoA reductase family