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Table 4 Analysis of single copy genes in the Actinidia chinensis genome

From: A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

Arabidopsis

 

Kiwifruit

     

Best hit 1

Chr

Best hit 2

Chr

Best hit 3

Chr

AGT1

AT2G13360

Acc30351.1

26

Acc32422.1

28

  

MAG1

At3g47810

Acc29850.1

26

Acc04108.1

3

Acc02358.1

2

DIENELACTONE HYDROLASE- like

At2g32520

Acc13638.1

12

    

ATPQ

At3g52300

Acc25925.1

23

Acc30188.1

26

Acc32243.1

28

RIBOSOMAL PROTEIN S8e

At5g06360

Acc12882.1

11

Acc17591.1

16

  

RRM

At5g04600

Acc04134.1

3

Acc27568.1

24

  

MGP1

At2g21870

Acc05500.1

5

Acc10590.1

9

  

EIF3K

At4g33250

Acc12920.1

12

Acc23419.1

20

  

Fb15

At4g30010

Acc12893.1

11

Acc17577.1

16

Acc27046.1

23

CCP2

At1g77710

Acc05095.1

4

Acc24370.1

21

  

Glycine rich protein

At4g08230

Acc05092.1

4

    

Cytochrome c oxidase

At4g37830

Acc05943.1

5

Acc30914.1

27

  

Unknown

At5g47570

Acc16748.1

15

Acc15793.1

14

Acc19901.1

18

PFD5

At5g23290

Acc28316.1

25

Acc31379.1

27

  

Unknown

At1g27530

Acc04831.1

4

Acc23863.1

21

  

RIDA

At3g20390

Acc21627

19

    

Unknown

At5g63135

Acc22027.1

19

Acc26769.1

23

  
  1. Best BLAST hits to the manually annotated gene models. Chromosome numbers in bold indicates the predicted homeologous chromosomes
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BMC Genomics

ISSN: 1471-2164

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