Table 1 Numbers of DE transcripts identified in pairwise time-point analyses, controlling for transcriptome wide changes in circRNA levels and locus specific changes in total expression
Comparison | Locus-level tests | Sample-level tests | Identified by both t-tests | ||
|---|---|---|---|---|---|
Fisher | t | Fisher | t | ||
day 0 v day 45 | 4207 | 63 | 6411 | 60 | 8 |
day 0 v day 90 | 2671 | 80 | 4577 | 46 | 12 |
day 0 v day 45 IGF-1 | 2965 | 496 | 4395 | 496 | 197 |
day 0 v day 90 IGF-1 | 2786 | 126 | 4362 | 148 | 29 |
day 45 v day 45 IGF-1 | 60 | 0 | 256 | 0 | 0 |
day 45 v day 90 | 121 | 0 | 208 | 0 | 0 |
day45 IGF-1 v day 90 IGF-1 | 10 | 1 | 56 | 0 | 0 |
day 90 v day 90 IGF-1 | 1 | 0 | 15 | 0 | 0 |