Table 2 Summary of cleaning data from CW, CS, HW and HS sRNA libraries
Type | CW | CS | HW | HS | ||||
|---|---|---|---|---|---|---|---|---|
Count | Percent (%) | Count | Percent (%) | Count | Percent (%) | Count | Percent (%) | |
Total reads | 11,255,470 | Â | 12,493,521 | Â | 11,296,147 | Â | 11,253,964 | Â |
High quality | 11,245,483 | 100 | 12,481,499 | 100 | 11,284,130 | 100 | 11,242,205 | 100 |
3’adapter null | 36,410 | 0.32 | 42,423 | 0.34 | 48,705 | 0.43 | 47,563 | 0.42 |
Insert null | 863 | 0.01 | 630 | 0.01 | 2094 | 0.02 | 1018 | 0.01 |
5’adapter contaminants | 9749 | 0.09 | 6490 | 0.05 | 14,824 | 0.13 | 11,375 | 0.10 |
Smaller than 18Â nt | 332,565 | 2.96 | 216,543 | 1.73 | 364,094 | 3.23 | 297,956 | 2.65 |
Poly(A) | 92 | 0.00 | 143 | 0.00 | 69 | 0.00 | 65 | 0.00 |
Clean reads | 10,865,804 | 96.62 | 12,215,270 | 97.87 | 10,854,344 | 96.19 | 10,884,228 | 96.82 |