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Table 3 Summary and classification of small RNAs in CW, CS, HW and HS libraries

From: Identification of microRNAs associated with the exogenous spermidine-mediated improvement of high-temperature tolerance in cucumber seedlings (Cucumis sativus L.)

Category

CW

CS

HW

HS

Unique sRNA (%)

Total sRNA (%)

Unique sRNA (%)

Total sRNA (%)

Unique sRNA (%)

Total sRNA (%)

Unique sRNA (%)

Total sRNA (%)

exon antisense

7067 (0.68)

17,282 (0.16)

14,310 (1.11)

31,030 (0.25)

5331 (0.73)

11,341 (0.10)

5901 (0.71)

15,843 (0.15)

exon sense

26,976 (2.59)

43,069 (0.40)

45,302 (3.53)

77,587 (0.64)

26,834 (3.68)

44,971 (0.41)

31,928 (3.85)

52,498 (0.48)

intron antisense

15,574 (1.50)

45,849 (0.42)

20,490 (1.59)

66,541 (0.54)

11,238 (1.54)

46,639 (0.43)

12,190 (1.47)

39,875 (0.37)

intron sense

24,802 (2.38)

78,844 (0.73)

31,903 (2.48)

105,302 (0.86)

18,472 (2.53)

61,713 (0.57)

20,467 (2.47)

61,559 (0.57)

rRNA

61,369 (5.90)

2,184,736 (20.11)

68,166 (5.31)

2,649,461 (21.69)

48,059 (6.59)

1,389,649 (12.80)

52,602 (6.35)

1,527,028 (14.03)

snRNA

2259 (0.22)

23,346 (0.21)

4234 (0.33)

48,054 (0.39)

2408 (0.33)

30,015 (0.28)

3316 (0.40)

46,895 (0.43)

snoRNA

2652 (0.25)

24,435 (0.22)

3388 (0.26)

32,840 (0.27)

2625 (0.36)

22,373 (0.21)

2958 (0.36)

23,719 (0.22)

tRNA

6487 (0.62)

141,212 (1.30)

8732 (0.68)

222,821 (1.82)

7140 (0.98)

156,167 (1.44)

9152 (1.10)

237,356 (2.18)

miRNA

6432 (0.62)

1,575,878 (14.50)

7270 (0.57)

2,148,690 (17.59)

7195 (0.99)

3,722,103 (34.29)

7145 (0.86)

2,612,864 (24.01)

unannotated

886,575 (85.23)

6,731,153 (61.95)

1,081,103 (84.14)

6,832,944 (55.94)

600,151 (82.27)

5,369,373 (49.47)

682,641 (82.41)

6,266,591 (57.57)

total

1,040,193

10,865,804

1,284,898

12,215,270

729,453

10,854,344

828,300

10,884,228