M4a | BFPb | 134 | 239 | 5213 | 11137 | 86-124 | AR CrossB10 | DW5 | DW7c | SD20c | |
---|---|---|---|---|---|---|---|---|---|---|---|
Sequencing Platform | PacBio | Sanger, Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina |
PE Read length (bp) | N/A | N/A | 100 | 100 | 100 | 100 | 150 | 150 | 100 | 75 | 75 |
Genome accessiond | NQIK00000000 | N/A | MVBF00000000 | MVBH00000000 | MVBI00000000 | MVBG00000000 | NRDI00000000 | NQWZ00000000 | MUXC00000000 | N/A | N/A |
Isolate information | |||||||||||
Collection site | Western Australia | South Dakota, USA | Queensland, Australia | Victoria, Australia | Queensland, Australia | Western Australia | Canada | Arkansas, USA | North Dakota, USA | North Dakota, USA | South Dakota, USA |
Collection year | 2009 | 1994e | 2001 | 2003 | 1987 | 2001 | 1989 | 2002 | 1998 | 1998 | 1998f |
Race | 1 | 1 | 1 | 1 | 1 | 1 | 2 | Newk | 5 | 5 | 4 |
Effectors | AC | AC | AC | AC | AC | AC | A | C | B | B | b |
Optical map | |||||||||||
% Mapped | 98 | 90 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
Contig assembly statistics | |||||||||||
Total length (Mb) | 40.9 | 38.0 | 34.0 | 34.4 | 34.1 | 33.9 | 34.4 | 33.8 | 33.4 | 32.9 | 34.1 |
Number | 50 | 48 | 3579 | 3309 | 3318 | 2645 | 3223 | 2867 | 3964 | 3533 | 7322 |
N50 (Mb) | 2.930 | 1.900 | 0.064 | 0.065 | 0.066 | 0.074 | 0.060 | 0.058 | 0.045 | 0.028 | 0.014 |
L50 | 6 | 6 | 150 | 148 | 150 | 130 | 168 | 171 | 208 | 348 | 661 |
Mean (Kb) | 802 | 778 | 9.5 | 10.4 | 10.3 | 12.8 | 10.3 | 11.3 | 8.4 | 9.3 | 4.6 |
Max (Mb) | 5.60 | 6.70 | 0.29 | 0.53 | 0.53 | 0.38 | 0.26 | 0.34 | 0.22 | 0.12 | 0.08 |
GC % | 50.73 | 50.89 | 50.86 | 50.84 | 50.85 | 50.87 | 51.35 | 50.90 | 50.90 | 50.89 | 50.79 |
% Repeath | 7.96 | 5.87 | 2.64 | 2.62 | 2.58 | 2.33 | 2.65 | 2.71 | 2.36 | 1.88 | 1.97 |
RNA-Seqi | 33.55 | 21.92g | 22.34 | 21.00 | 23.00 | 21.22 | 19.87 | 19.92 | 24.44 | 20.63g | 16.10g |
% RNA-Seqj | 85.1 | 79.4–81.4 | 81.1 | 81.2 | 82.2 | 80.9 | 76.0 | 76.2 | 81.9 | 74.2–78.5 | 58.2–60.0 |