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Fig. 1 | BMC Genomics

Fig. 1

From: Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

Fig. 1

Pipeline for annotation of core epigenetic factors with a focus on root-knot nematodes (RKN). Step 1 consisted of the annotation, based on both OrthoMCL and Interproscan, of 4 RKN species together with 6 model species and 10 other species selected for their lifestyles and/or epigenetic interest. In parallel, step 2 consisted of creating a repertory of known epigenetic factors from public data on 6 model species. Step 3 consisted of the extraction of putative epigenetic factor from step 1 data, based on comparison with reference dataset created during step 2. Finally, step 4 consisted of the validation and characterization of epigenetic factors thanks to phylogenetic analysis

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