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Table 1 Selection signatures detected by hapFLK across the five generations of selection

From: Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL

Name

Chr

Starta

Enda

Length (Mb)

Marker-start

Marker-end

-log10 (pvalue)

generations

hapFLK-1a

1

2,276,648

2,445,683

0,17

Gga_rs13824804

GGaluGA002933

3.1

4

hapFLK-1b

1

7,050,235

16,305,108

9,25

Gga_rs13826175

Gga_rs14792165

13.8

1/2/3/4/5

hapFLK-1c

1

18,755,135

29,764,967

11,01

Gga_rs13834995

GGaluGA010403

16

1/2/3/4/5

hapFLK-1d

1

31,514,282

32,835,659

1,32

Gga_rs15226289

GGaluGA011179

5.1

3

hapFLK-1e

1

81,104,398

82,966,198

1,86

Gga_rs15322461

GGaluGA028823

4.2

4/5

hapFLK-1f

1

145,728,258

147,459,365

1,73

Gga_rs13953792

Gga_rs14902012

6.3

5

hapFLK-2a

2

7,923,417

10,281,724

2,36

Gga_rs15881724

Gga_rs14137940

6.7

5

hapFLK-2b

2

18,276,719

19,514,706

1,24

GGaluGA135806

Gga_rs14147239

3.6

5

hapFLK-2c

2

24,502,152

33,353,778

8,85

GGaluGA138005

GGaluGA140460

14.8

1/2/3/4/5

hapFLK-2d

2

68,724,706

70,032,818

1,31

Gga_rs16032833

Gga_rs14203112

3.6

2

hapFLK-2e

2

118,779,538

121,679,302

2,90

Gga_rs14241471

Gga_rs13730111

6.6

1/2

hapFLK-2f

2

136,816,316

137,093,235

0,28

Gga_rs15168561

GGaluGA170627

3.6

2

hapFLK-3a

3

7,225,785

7,845,634

0,62

Gga_rs14318013

GGaluGA205732

3.5

3

hapFLK-3b

3

48,835,040

51,520,696

2,69

Gga_rs14356552

GGaluGA222074

4.5

5

hapFLK-3c

3

62,672,584

63,014,334

0,34

Gga_rs14367181

Gga_rs14367507

3

3

hapFLK-3d

3

66,769,291

67,246,937

0,48

GGaluGA226759

GGaluGA226948

3.9

2/4

hapFLK-3e

3

85,356,860

87,242,706

1,89

Gga_rs16314104

Gga_rs15417891

5

4

hapFLK-3f

3

104,431,751

104,471,024

0,04

Gga_rs16336587

GGaluGA237591

2.9

3

hapFLK-4a

4

82,885,618

83,329,800

0,44

Gga_rs14498140

Gga_rs14498744

3.6

3/4/5

hapFLK-5a

5

10,152,843

11,215,390

1,06

Gga_rs14513950

Gga_rs14514889

6.7

1/2/3/4/5

hapFLK-5b

5

19,178,024

19,259,330

0,08

Gga_rs14520166

Gga_rs14520241

2.8

5

hapFLK-5c

5

20,133,297

21,384,953

1,25

Gga_rs14520800

GGaluGA278428

4.7

5

hapFLK-5d

5

27,596,949

28,539,932

0,94

Gga_rs14526966

Gga_rs16483831

4.1

1

hapFLK-5e

5

28,673,701

29,366,436

0,69

GGaluGA281566

Gga_rs14528861

3.6

1

hapFLK-8a

8

7,263,002

7,612,534

0,35

Gga_rs14638726

GGaluGA325359

3.8

2

hapFLK-8b

8

8,018,303

8,405,519

0,39

Gga_rs14639635

Gga_rs13663458

3.2

2

hapFLK-9a

9

16,456,190

16,641,999

0,19

GGaluGA341646

GGaluGA341716

3.2

2

hapFLK-9b

9

16,974,003

17,732,211

0,76

GGaluGA341780

GGaluGA341981

3.3

2

hapFLK-9c

9

18,382,877

18,479,085

0,10

Gga_rs16675119

Gga_rs14678141

2.9

2

hapFLK-9d

9

18,631,820

19,401,339

0,77

Gga_rs16675279

GGaluGA342447

3.5

2

hapFLK-9e

9

19,461,244

21,431,722

1,97

GGaluGA342478

Gga_rs16678760

7.3

2/4/5

hapFLK-9f

9

21,879,722

22,086,546

0,21

Gga_rs15985674

GGaluGA343636

3

5

hapFLK-10a

10

19,081,523

19,299,306

0,22

Gga_rs10723404

GGaluGA072999

3

3

hapFLK-11a

11

17,073,257

17,609,983

0,54

Gga_rs14027883

Gga_rs14028221

4.4

2/3/4

hapFLK-12a

12

10,796,360

11,156,696

0,36

Gga_rs14979504

Gga_rs14041284

3.7

1

hapFLK-12b

12

19,481,668

19,919,088

0,44

Gga_rs15675057

Gga_rs15675542

5.1

1/2

hapFLK-13a

13

12,453,968

12,578,242

0,12

Gga_rs14060968

Gga_rs15701870

3

3

hapFLK-13b

13

14,544,320

15,159,550

0,62

Gga_rs15704836

Gga_rs15705956

4.7

1

hapFLK-13c

13

15,240,280

15,290,260

0,05

Gga_rs15706156

GGaluGA097106

3.2

1

hapFLK-13d

13

15,616,564

15,746,776

0,13

GGaluGA097221

Gga_rs14063767

3.4

1

hapFLK-14a

14

3,483,024

3,608,186

0,13

Gga_rs14071682

Gga_rs14071828

3

4

hapFLK-14b

14

4,115,926

4,227,946

0,11

Gga_rs14072331

Gga_rs15725549

3.1

3

hapFLK-14c

14

5,463,733

5,536,467

0,07

Gga_rs14073705

Gga_rs15007686

3

2/3

hapFLK-14d

14

14,443,050

14,996,320

0,55

Gga_rs16702231

Gga_rs16015979

3.4

1

hapFLK-15a

15

5,559,590

5,671,833

0,11

GGaluGA108081

Gga_rs15020764

3.4

1

hapFLK-15b

15

7,076,061

7,108,783

0,03

Gga_rs14091544

Gga_rs13527470

3.1

1

hapFLK-15c

15

11,807,086

11,997,509

0,19

Gga_rs15786648

Gga_rs15787069

3.3

1

hapFLK-20a

20

1,850,026

2,053,990

0,20

GGaluGA175409

GGaluGA175568

3.3

1

hapFLK-20b

20

2,982,158

3,193,898

0,21

GGaluGA176153

Gga_rs16161873

3.4

2

hapFLK-22a

22

1,552,061

1,609,384

0,06

GGaluGA185952

Gga_rs16688631

3

2

hapFLK-26a

26

3,525,075

4,343,150

0,82

Gga_rs14299983

GGaluGA197644

7.5

5

hapFLK-26b

26

4,439,104

4,504,187

0,07

GGaluGA197707

Gga_rs15236117

3.1

5

hapFLK-26c

26

4,700,655

4,736,272

0,04

Gga_rs10724076

Gga_rs14301155

2.8

5

  1. a Positions are indicated on galgal5 assembly