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Table 1 Selection signatures detected by hapFLK across the five generations of selection

From: Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL

Name Chr Starta Enda Length (Mb) Marker-start Marker-end -log10 (pvalue) generations
hapFLK-1a 1 2,276,648 2,445,683 0,17 Gga_rs13824804 GGaluGA002933 3.1 4
hapFLK-1b 1 7,050,235 16,305,108 9,25 Gga_rs13826175 Gga_rs14792165 13.8 1/2/3/4/5
hapFLK-1c 1 18,755,135 29,764,967 11,01 Gga_rs13834995 GGaluGA010403 16 1/2/3/4/5
hapFLK-1d 1 31,514,282 32,835,659 1,32 Gga_rs15226289 GGaluGA011179 5.1 3
hapFLK-1e 1 81,104,398 82,966,198 1,86 Gga_rs15322461 GGaluGA028823 4.2 4/5
hapFLK-1f 1 145,728,258 147,459,365 1,73 Gga_rs13953792 Gga_rs14902012 6.3 5
hapFLK-2a 2 7,923,417 10,281,724 2,36 Gga_rs15881724 Gga_rs14137940 6.7 5
hapFLK-2b 2 18,276,719 19,514,706 1,24 GGaluGA135806 Gga_rs14147239 3.6 5
hapFLK-2c 2 24,502,152 33,353,778 8,85 GGaluGA138005 GGaluGA140460 14.8 1/2/3/4/5
hapFLK-2d 2 68,724,706 70,032,818 1,31 Gga_rs16032833 Gga_rs14203112 3.6 2
hapFLK-2e 2 118,779,538 121,679,302 2,90 Gga_rs14241471 Gga_rs13730111 6.6 1/2
hapFLK-2f 2 136,816,316 137,093,235 0,28 Gga_rs15168561 GGaluGA170627 3.6 2
hapFLK-3a 3 7,225,785 7,845,634 0,62 Gga_rs14318013 GGaluGA205732 3.5 3
hapFLK-3b 3 48,835,040 51,520,696 2,69 Gga_rs14356552 GGaluGA222074 4.5 5
hapFLK-3c 3 62,672,584 63,014,334 0,34 Gga_rs14367181 Gga_rs14367507 3 3
hapFLK-3d 3 66,769,291 67,246,937 0,48 GGaluGA226759 GGaluGA226948 3.9 2/4
hapFLK-3e 3 85,356,860 87,242,706 1,89 Gga_rs16314104 Gga_rs15417891 5 4
hapFLK-3f 3 104,431,751 104,471,024 0,04 Gga_rs16336587 GGaluGA237591 2.9 3
hapFLK-4a 4 82,885,618 83,329,800 0,44 Gga_rs14498140 Gga_rs14498744 3.6 3/4/5
hapFLK-5a 5 10,152,843 11,215,390 1,06 Gga_rs14513950 Gga_rs14514889 6.7 1/2/3/4/5
hapFLK-5b 5 19,178,024 19,259,330 0,08 Gga_rs14520166 Gga_rs14520241 2.8 5
hapFLK-5c 5 20,133,297 21,384,953 1,25 Gga_rs14520800 GGaluGA278428 4.7 5
hapFLK-5d 5 27,596,949 28,539,932 0,94 Gga_rs14526966 Gga_rs16483831 4.1 1
hapFLK-5e 5 28,673,701 29,366,436 0,69 GGaluGA281566 Gga_rs14528861 3.6 1
hapFLK-8a 8 7,263,002 7,612,534 0,35 Gga_rs14638726 GGaluGA325359 3.8 2
hapFLK-8b 8 8,018,303 8,405,519 0,39 Gga_rs14639635 Gga_rs13663458 3.2 2
hapFLK-9a 9 16,456,190 16,641,999 0,19 GGaluGA341646 GGaluGA341716 3.2 2
hapFLK-9b 9 16,974,003 17,732,211 0,76 GGaluGA341780 GGaluGA341981 3.3 2
hapFLK-9c 9 18,382,877 18,479,085 0,10 Gga_rs16675119 Gga_rs14678141 2.9 2
hapFLK-9d 9 18,631,820 19,401,339 0,77 Gga_rs16675279 GGaluGA342447 3.5 2
hapFLK-9e 9 19,461,244 21,431,722 1,97 GGaluGA342478 Gga_rs16678760 7.3 2/4/5
hapFLK-9f 9 21,879,722 22,086,546 0,21 Gga_rs15985674 GGaluGA343636 3 5
hapFLK-10a 10 19,081,523 19,299,306 0,22 Gga_rs10723404 GGaluGA072999 3 3
hapFLK-11a 11 17,073,257 17,609,983 0,54 Gga_rs14027883 Gga_rs14028221 4.4 2/3/4
hapFLK-12a 12 10,796,360 11,156,696 0,36 Gga_rs14979504 Gga_rs14041284 3.7 1
hapFLK-12b 12 19,481,668 19,919,088 0,44 Gga_rs15675057 Gga_rs15675542 5.1 1/2
hapFLK-13a 13 12,453,968 12,578,242 0,12 Gga_rs14060968 Gga_rs15701870 3 3
hapFLK-13b 13 14,544,320 15,159,550 0,62 Gga_rs15704836 Gga_rs15705956 4.7 1
hapFLK-13c 13 15,240,280 15,290,260 0,05 Gga_rs15706156 GGaluGA097106 3.2 1
hapFLK-13d 13 15,616,564 15,746,776 0,13 GGaluGA097221 Gga_rs14063767 3.4 1
hapFLK-14a 14 3,483,024 3,608,186 0,13 Gga_rs14071682 Gga_rs14071828 3 4
hapFLK-14b 14 4,115,926 4,227,946 0,11 Gga_rs14072331 Gga_rs15725549 3.1 3
hapFLK-14c 14 5,463,733 5,536,467 0,07 Gga_rs14073705 Gga_rs15007686 3 2/3
hapFLK-14d 14 14,443,050 14,996,320 0,55 Gga_rs16702231 Gga_rs16015979 3.4 1
hapFLK-15a 15 5,559,590 5,671,833 0,11 GGaluGA108081 Gga_rs15020764 3.4 1
hapFLK-15b 15 7,076,061 7,108,783 0,03 Gga_rs14091544 Gga_rs13527470 3.1 1
hapFLK-15c 15 11,807,086 11,997,509 0,19 Gga_rs15786648 Gga_rs15787069 3.3 1
hapFLK-20a 20 1,850,026 2,053,990 0,20 GGaluGA175409 GGaluGA175568 3.3 1
hapFLK-20b 20 2,982,158 3,193,898 0,21 GGaluGA176153 Gga_rs16161873 3.4 2
hapFLK-22a 22 1,552,061 1,609,384 0,06 GGaluGA185952 Gga_rs16688631 3 2
hapFLK-26a 26 3,525,075 4,343,150 0,82 Gga_rs14299983 GGaluGA197644 7.5 5
hapFLK-26b 26 4,439,104 4,504,187 0,07 GGaluGA197707 Gga_rs15236117 3.1 5
hapFLK-26c 26 4,700,655 4,736,272 0,04 Gga_rs10724076 Gga_rs14301155 2.8 5
  1. a Positions are indicated on galgal5 assembly
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