Skip to main content

Table 2 Additional selection signatures detected by FLK across the five generations of selection

From: Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL

Name Chr Starta End Length
(Mb)
Marker-start Marker-end -log10 (pvalue) generations Nb. Significant SNP BF GWASb
FLK-2a 2 5,149,709 7,570,647 2.42 Gga_rs14131676 GGaluGA132502 4.2 5 1 3.7
FLK-2b 2 91,974,519 93,901,297 1.93 Gga_rs14219779 GGaluGA158657 4.8 5 12 1.2
FLK-3a 3 40,294,349 42,270,023 1.98 GGaluGA218034 Gga_rs13782352 4.6 5 1 3.2
FLK-8a 8 19,374,476 21,341,372 1.97 Gga_rs15922613 Gga_rs16638942 4.6 5 1 24.1
FLK-8b 8 27,320,551 29,297,449 1.98 Gga_rs14656403 GGaluGA333330 4.5 4/5 1 5.8
FLK-11a 11 11,744,741 14,765,393 3.02 GGaluGA077714 GGaluGA078384 4.7 5 3 9.6
FLK-13a 13 1,467,325 4,738,749 3.27 Gga_rs14049759 Gga_rs14054446 5.2 5 1 11.5
FLK-13b 13 9,083,535 12,423,603 3.34 Gga_rs16700430 GGaluGA095616 8.4 5 9 2.4
FLK-17a 17 6,849,442 9,763,118 2.91 Gga_rs14100058 Gga_rs15027305 4.8 5 2 10.8
FLK-24a 24 2,969,632 4,863,150 1.89 Gga_rs16195909 Gga_rs14297847 4.6 5 1 2
  1. aPositions are indicated on galgal5 assembly
  2. bLargest Bayes Factor for the association with the ultimate pH of pectoralis major (PM-pHu), for a model without line effect, among the SNPs in the region
\