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Table 2 Additional selection signatures detected by FLK across the five generations of selection

From: Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL

Name

Chr

Starta

End

Length

(Mb)

Marker-start

Marker-end

-log10 (pvalue)

generations

Nb. Significant SNP

BF GWASb

FLK-2a

2

5,149,709

7,570,647

2.42

Gga_rs14131676

GGaluGA132502

4.2

5

1

3.7

FLK-2b

2

91,974,519

93,901,297

1.93

Gga_rs14219779

GGaluGA158657

4.8

5

12

1.2

FLK-3a

3

40,294,349

42,270,023

1.98

GGaluGA218034

Gga_rs13782352

4.6

5

1

3.2

FLK-8a

8

19,374,476

21,341,372

1.97

Gga_rs15922613

Gga_rs16638942

4.6

5

1

24.1

FLK-8b

8

27,320,551

29,297,449

1.98

Gga_rs14656403

GGaluGA333330

4.5

4/5

1

5.8

FLK-11a

11

11,744,741

14,765,393

3.02

GGaluGA077714

GGaluGA078384

4.7

5

3

9.6

FLK-13a

13

1,467,325

4,738,749

3.27

Gga_rs14049759

Gga_rs14054446

5.2

5

1

11.5

FLK-13b

13

9,083,535

12,423,603

3.34

Gga_rs16700430

GGaluGA095616

8.4

5

9

2.4

FLK-17a

17

6,849,442

9,763,118

2.91

Gga_rs14100058

Gga_rs15027305

4.8

5

2

10.8

FLK-24a

24

2,969,632

4,863,150

1.89

Gga_rs16195909

Gga_rs14297847

4.6

5

1

2

  1. aPositions are indicated on galgal5 assembly
  2. bLargest Bayes Factor for the association with the ultimate pH of pectoralis major (PM-pHu), for a model without line effect, among the SNPs in the region