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Table 2 Cis-regulatory elements in chickpea ARF promoters

From: Genome-wide identification of the auxin response factor gene family in Cicer arietinum

CRE Motif Querya Promoters Observed Total Occurrences Observedb Avg. Number Occurrs. per promoter Total Occurrs. Expectedc Enrichment Factord P-valuee
AGCBOXNPGLB AGCCGCC 23 1 1 1.00 0.0575 17.39 0.0041
RAV1AAT CAACA 23 22 93 4.23 31.02 3.00 0.0337
GT1GMSCAM4 GAAAAA 23 22 72 3.27 28.98 2.48 0.0327
Motif CTCTT CTCTT 23 23 77 3.35 1.33 2.43 0.0325
SURE2STPAT21 AATACAAAA 23 3 3 1.00 1.58 1.90 0.0194
AuxRe1 TGTCTC 23 6 8 1.33 4.77 1.68 0.0293
WBBOXPCWRKY1 TTTGACY 23 7 8 1.14 1.37 1.41  
MYCATERD22 CACATG 23 6 7 1.17 4.53 1.54  
MYCATERD1 CATGTG 23 7 7 1.00 4.67 1.50  
ABRE ACGTGTC 23 1 1 1.00 0.69 1.45  
  1. aTotal number of promoters in the query set
  2. bTotal number of motifs in the query set
  3. cTotal number of motifs expected to occur by chance/1.5 kb promoter based on nucleotide frequency in 23 promoter sequences
  4. dNumber of motifs observed divided by the number of motifs expected to occur by chance
  5. eProbabilities based on 2000 Monte Carlo simulations