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Table 1 Species sets used for algorithm validation

From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

  Species Name Source Version/Strain Taxonomy ID References
Plant species Arabidopsis thaliana JGI1 TAIR10 3702 [39, 40]
Brassica rapa JGI v1.3 3711 [27]
Carica papaya JGI ASGPBv0.4 3649 [39, 41]
Capsella rubella JGI v1.0 81,985 [39, 42]
Theobroma cacao JGI v1.1 3641 [39, 43]
Mammalian species Canis lupus familiaris NCBI CanFam3.1/AR105 6915 [44, 45]
Homo sapiens CCDS3 GRCh38.p7/CCDS20 9606 [46]
Monodelphis domestica NCBI MonDom5 / AR103 13,616 [45, 47]
Mus musculus CCDS GRCm38.p4/CCDS21 10,090 [46]
Oryctolagus cuniculus NCBI OryCun2.0/AR102 568,996 [45, 48]
Fungal species Eremothecium gossypii JG ATCC10895 284,811 [49]
Debaryomyces hansenii JGI CBS767 284,592 [50, 51]
Kluyveromyces lactis JGI CLIB210 284,590 [50]
Saccharomyces cerevisiae SGD4 S288C 559,292 [52]
Yarrowia lipolytica JGI CLIB122 284,591 [50]
  1. 1 Joint Genome Institute; 2 National Centre for Biotechnology Information; 3 Consensus Coding Sequence Project; 4 Saccharomyces Genome Database