Table 2 SRA RNA-seq data sources
From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
| Â | Species | SRA ID | Instrument/details |
|---|---|---|---|
Plants | A. thaliana | SRR3932355 | Illumina HiSeq 2500, paired end. Wild type Columbia |
B. rapa | SRR2984945 | Illumina HiSeq 2000, paired end. ga-deficient dwarf (gad1–2) + GA rep2 | |
C. papaya | SRR3509576 | Illumina HiSeq 2500, paired end. SunUp/Sunset cultivar, young hermaphrodite leaf | |
C. rubella | SRR3993756 | Illumina HiSeq 2000, paired end. Leaf sample | |
T. cacao | SRR3217315 | Illumina HiSeq 2000, paired end. Flower/leaf sample | |
Mammals | C. lupus | ERR266386 | Illumina Genome Analyzer II, paired end, brain frontal cortex, male |
ERR266355 | Illumina Genome Analyzer II, paired end, brain frontal cortex, female | ||
ERR266382 | Illumina Genome Analyzer II, paired end, brain frontal cortex, male | ||
H. sapiens | SRR5938455 | Illumina HiSeq 2000, paired end, dorsolateral prefrontal cortex, male | |
M. domestica | SRR500906 | Illumina HiSeq 2000, paired end, brain | |
SRR500925 | Illumina HiSeq 2000, paired end, brain | ||
M. musculus | SRR5441717 | Illumina HiSeq 2000, paired end, brain (striatum) | |
SRR6269591 | Illumina NovaSeq 6000, paired end, cerebellum | ||
O. cuniculus | ERR266399 | Illumina Genome Analyzer II, paired end, brain frontal cortex, female | |
SRR400990 | Illumina Genome Analyzer II, paired end, brain frontal cortex | ||
SRR401040 | Illumina Genome Analyzer II, paired end, brain frontal cortex | ||
SRR401041 | Illumina Genome Analyzer II, paired end, brain frontal cortex | ||
SRR401042 | Illumina Genome Analyzer II, paired end, brain frontal cortex | ||
Fungi | K. lactis | SRR1200528 | Illumina Genome Analyzer II, single |
S. cerevisiae | SRR539284 | Illumina HiSeq 2000, paired end | |
Y. lipolytica | SRR868669 | Illumina HiSeq 2000, single |