OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

BMC Genomics

Table 4 Summary of gene model change categories

	Species	No. changes	Exon boundary		Exon		Intron		Moved start
	Species	No. changes	contraction	extension	add	del	add	del
Plants	A. thaliana	242	47	23	4	117	5	13	33
	B. rapa	134	11	14	9	56	3	8	33
	C. papaya	928	148	205	95	345	18	42	74
	C. rubella	415	32	32	39	101	1	19	191
	T. cacao	949	117	59	9	624	10	13	117
	TOTAL	2668	355	333	156	1243	37	95	448
	A. thaliana de novo	1344	151	255	49	780	2	10	97
Mammals	C. lupus	980	116	72	38	418	9	4	323
	H. sapiens	485	31	43	29	223	0	0	159
	M. domestica	1148	122	89	56	472	19	3	387
	M. musculus	324	20	29	42	111	6	6	110
	O. cuniculus	834	139	122	43	245	18	9	258
	TOTAL	3771	428	355	208	1469	52	22	1237
	H. sapiens de novo	8883	606	1128	1866	4217	16	17	1033
Fungi	E. gossypii	46	0	0	0	1	0	0	45
	D. hansenii	13	0	0	0	1	0	0	12
	K. lactis	11	0	0	0	0	0	0	11
	S. cerevisiae	13	1	0	0	0	1	1	10
	Y. lipolytica	24	0	0	0	4	5	0	15
	TOTAL	107	1	0	0	6	6	1	93
	S. cerevisiae de novo	20	0	2	0	4	0	2	12

ISSN: 1471-2164