Table 5 RNA-seq coverage and junction F-scores
From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
| Â | Species | Junction F-score | Coverage F-score | ||
|---|---|---|---|---|---|
Better | Worse | Better | Worse | ||
Plants | A. thaliana | 94 (87.8%) | 13 (12.1%) | 109 (91.5%) | 10 (8.4%) |
B. rapa | 24 (63.1%) | 14 (36.8%) | 29 (56.8%) | 22 (43.1%) | |
C. papaya | 246 (82.2%) | 53 (17.7%) | 344 (83.9%) | 66 (16.0%) | |
C. rubella | 90 (89.1%) | 11 (10.8%) | 186 (91.6%) | 17 (8.3%) | |
T. cacao | 275 (88.9%) | 34 (11.0%) | 358 (87.3%) | 52 (12.6%) | |
TOTAL | 729 (85.3%) | 125 (14.6%) | 1026 (86.0%) | 167 (13.9%) | |
A. thaliana de novo | 422 (87.3%) | 61 (12.6%) | 475 (91.1%) | 46 (8.8%) | |
Mammals | C. lupus | 323 (85.9%) | 53 (14.1%) | 478 (86.28%) | 76 (13.72%) |
H. sapiens | 102 (82.9%) | 21 (17.1%) | 258 (87.46%) | 37 (12.54%) | |
M. domestica | 239 (72.2%) | 92 (27.8%) | 439 (76.48%) | 135 (23.52%) | |
M. musculus | 71 (62.3%) | 43 (37.7%) | 133 (71.12%) | 54 (28.88%) | |
O. cuniculus | 213 (84.2%) | 40 (15.8%) | 353 (86.10%) | 57 (13.90%) | |
TOTAL | 948 (79.2%) | 249 (112.5%) | 1661 (82.83%) | 359 (17.77%) | |
H. sapiens de novo | 832 (89.4%) | 99 (10.6%) | 2017 (88.74%) | 256 (11.26%) | |
Fungi | K. lactis | 0 (N/A) | 0 (N/A) | 9 (100.0%) | 0 (0%) |
S. cerevisiae | 0 (N/A) | 0 (N/A) | 6 (75.0%) | 2 (25.0%) | |
Y. lipolytica | 2 (28.5%) | 5 (71.4%) | 11 (64.7%) | 6 (35.2%) | |
TOTAL | 3 (37.5%) | 5 (62.5%) | 30 (75.0%) | 10 (25.0%) | |
S. cerevisiae de novo | 4 (100%) | 0 (0%) | 11 (64.7%) | 6 (35.2%) | |