Skip to main content

Table 5 RNA-seq coverage and junction F-scores

From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

  Species Junction F-score Coverage F-score
Better Worse Better Worse
Plants A. thaliana 94 (87.8%) 13 (12.1%) 109 (91.5%) 10 (8.4%)
B. rapa 24 (63.1%) 14 (36.8%) 29 (56.8%) 22 (43.1%)
C. papaya 246 (82.2%) 53 (17.7%) 344 (83.9%) 66 (16.0%)
C. rubella 90 (89.1%) 11 (10.8%) 186 (91.6%) 17 (8.3%)
T. cacao 275 (88.9%) 34 (11.0%) 358 (87.3%) 52 (12.6%)
TOTAL 729 (85.3%) 125 (14.6%) 1026 (86.0%) 167 (13.9%)
A. thaliana de novo 422 (87.3%) 61 (12.6%) 475 (91.1%) 46 (8.8%)
Mammals C. lupus 323 (85.9%) 53 (14.1%) 478 (86.28%) 76 (13.72%)
H. sapiens 102 (82.9%) 21 (17.1%) 258 (87.46%) 37 (12.54%)
M. domestica 239 (72.2%) 92 (27.8%) 439 (76.48%) 135 (23.52%)
M. musculus 71 (62.3%) 43 (37.7%) 133 (71.12%) 54 (28.88%)
O. cuniculus 213 (84.2%) 40 (15.8%) 353 (86.10%) 57 (13.90%)
TOTAL 948 (79.2%) 249 (112.5%) 1661 (82.83%) 359 (17.77%)
H. sapiens de novo 832 (89.4%) 99 (10.6%) 2017 (88.74%) 256 (11.26%)
Fungi K. lactis 0 (N/A) 0 (N/A) 9 (100.0%) 0 (0%)
S. cerevisiae 0 (N/A) 0 (N/A) 6 (75.0%) 2 (25.0%)
Y. lipolytica 2 (28.5%) 5 (71.4%) 11 (64.7%) 6 (35.2%)
TOTAL 3 (37.5%) 5 (62.5%) 30 (75.0%) 10 (25.0%)
S. cerevisiae de novo 4 (100%) 0 (0%) 11 (64.7%) 6 (35.2%)