Skip to main content

Table 3 Short copy number variations are found in repetitive genomic regions

From: Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

Isolates

WSU107–0081 (wt, Arbutus) normal euploid

WSU107–0086 (wt, Rhododendron) normal euploid

Pr-106 (wt, bay) normal euploid

WSU107–0057 (wt, Rhododendron) sCNV euploid

WSU108–0021 (wt, Viburnum) sCNV euploid

Overlap between WSU107–0057 and 108–0021

Total sCNV (average size)

71 (1888 bp)

71 (3021 bp)

102 (1751 bp)

357 (1255 bp)

446 (988 bp)

275

sCNV at multicopy regions

62 (87.3%)

68 (96%)

96 (94%)

319 (89.4%)

393 (88.1%)

267

sCNVs at TEsa

18 (25.3%)

6 (8.5%)

32 (31%)a

135 (37.8%)a

169 (37.9%)a

97

sCNVs at tandem repeat regionsa

15 (21.5%)a

18 (25.3%)a

10 (9.8%)a

58 (16.2%)a

70 (15.7%)a

51

  1. a A randomization test showed that observed sCNVs at TEs or tandem repeats were significantly more frequent than expected by chance (p < 0.01)