Table 6 List of significant whole genome motifs found in Neanderthal and Denisovan ERVs
From: Motifome comparison between modern human, Neanderthal and Denisovan
Motif | HERV id(s) | Score |
|---|---|---|
AGGTGGGA | HERV-K-De1, 3, 6 | 0.855 |
CACACCTG | HERV-K-De1, 3, 5, 6 | 0.889 |
CAGGTGTG | HERV-K-De2 | 0.888 |
GGAGGGGC | HERV-K-De2 | 0.845 |
AAAAGAAA | HERV-K-De5, 7 | 0.862 |
AAAGAAAA | HERV-K-De5 | 0.864 |
TTCTTTCT | HERV-K-De6 | 0.839 |
CACACCTGT | HERV-K-De1, 3, 5, 6 | 0.937 |
ACAGGTGTG | HERV-K-De2 | 0.937 |
CAGGTGTGG | HERV-K-De2 | 0.916 |
GTGGAGGGG | HERV-K-De2 | 0.838 |
AAGAAAAAG | HERV-K-De5 | 0.838 |
AAAAGAAAG | HERV-K-De7 | 0.848 |
AAAGAAAGA | HERV-K-De7 | 0.897 |
AGAAAAAGA | HERV-K-De5 | 0.85 |
AGAAAGAGA | HERV-K-De7 | 0.834 |
GAAAAGAAA | HERV-K-De5, 7 | 0.869 |
ACACACCTGT | HERV-K-De1, 3, 5, 6 | 0.873 |
CACACCTGTG | HERV-K-De1, 3, 5, 6 | 0.858 |
CTTTTCCCCA | HERV-K-De1, 3, 5, 6 | 0.854 |
CACAGGTGTG | HERV-K-De2 | 0.853 |
GGTGTGGAGG | HERV-K-De2 | 0.86 |
GTGGAGGGGC | HERV-K-De2 | 0.849 |
TGGGGAAAAG | HERV-K-De2, 7 | 0.852 |
AAAGAAAGAG | HERV-K-De7 | 0.882 |
AAGAAAGAGA | HERV-K-De7 | 0.879 |
AGGTGGGA | HERV-K-Ne1 | 0.855 |
CACACCTG | HERV-K-Ne1, 2 | 0.889 |
TTCTTTCT | HERV-K-Ne1 | 0.837 |
CACACCTGT | HERV-K-Ne1, 2 | 0.937 |
ACACACCTGT | HERV-K-Ne1, 2 | 0.873 |
CACACCTGTG | HERV-K-Ne1, 2 | 0.858 |
CTTTTCCCCA | HERV-K-Ne1, 2 | 0.854 |