Fig. 7

Estimation of N _e over time, inferred from heterozygous bases of individual genome sequences with the PSMC model. Results are shown for the observed data (bold lines) and bootstrap replicates for the Bambusicola genome sequence as well as two previously published Gallus gallus genome sequences. Estimates are included for the 23× and 35× Gallus genomes for short reads aligned directly to the Gallus reference genome (reference) as well as short reads aligned to a de novo assembly (de novo) for the 23× Gallus genome