| |
SOAP denovo2
|
ABySS
|
MsSuRCA
|
Bambusicola
|
Colinus
|
Coturnix
|
Gallus
|
Meleagris
|
|---|
|
Total contig length
|
1.475 Gb
|
1.049 Gb
|
1.068 Gb
|
–
|
–
|
–
|
–
|
–
|
|
Total scaffold length
|
1.543 Gb
|
1.049 Gb
|
1.069 Gb
|
1.032 Gb
|
1.172 Gb
|
1.751 Gb
|
1.047 Gb
|
1.062 Gb
|
|
# contigs
|
3,657,399
|
872,000
|
255,563
|
–
|
–
|
–
|
–
|
–
|
|
# scaffolds
|
2,514,856
|
871,673
|
232,161
|
163,749
|
220,307
|
275,637
|
15,932
|
5884
|
|
# Contigs > 1 kb
|
188,688
|
194,673
|
145,400
|
–
|
–
|
–
|
–
|
–
|
|
# Scaffolds > 1 kb
|
312,353
|
194,682
|
128,638
|
123,582
|
65,748
|
275,637
|
14,828
|
5866
|
|
Med. contig length
|
254
|
162
|
1383
|
–
|
–
|
–
|
–
|
–
|
|
Med. scaf. Length
|
282
|
162
|
1296
|
3145
|
559
|
2991
|
1206
|
1561
|
|
Max contig length
|
97.41 kb
|
111.0 kb
|
201.7 kb
|
–
|
–
|
–
|
–
|
–
|
|
Max scaf. Length
|
400.4 kb
|
111.0 kb
|
311.0 kb
|
311.0 kb
|
600.7 kb
|
1.501 Mb
|
195.3 Mb
|
204.1 Mb
|
|
Contig N50
|
508
|
5668
|
10,589
|
–
|
–
|
–
|
–
|
–
|
|
Scaffold N50
|
1154
|
5670
|
12,505
|
13,160
|
45,461
|
11,408
|
90.22 Mb
|
74.86 Mb
|
|
Gene Models
|
–
|
–
|
–
|
17,772
|
15,984
|
27,554
|
16,354
|
16,494
|
|
Comp. BUSCOS
|
–
|
–
|
–
|
45%
|
54%
|
46%
|
90%
|
81%
|
|
Frag. BUSCOS
|
–
|
–
|
–
|
19%
|
18%
|
20%
|
4%
|
7%
|
- Assembly statistics for individual methods are given as well as the merged Bambusicola assembly. Comparative assembly metrics for other genomes included in this study were taken from primary literature
