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Table 2 Comparison of Bambusicola assemblies and published genomes utilized in this study

From: Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

  SOAP denovo2 ABySS MsSuRCA Bambusicola Colinus Coturnix Gallus Meleagris
Total contig length 1.475 Gb 1.049 Gb 1.068 Gb
Total scaffold length 1.543 Gb 1.049 Gb 1.069 Gb 1.032 Gb 1.172 Gb 1.751 Gb 1.047 Gb 1.062 Gb
# contigs 3,657,399 872,000 255,563
# scaffolds 2,514,856 871,673 232,161 163,749 220,307 275,637 15,932 5884
# Contigs > 1 kb 188,688 194,673 145,400
# Scaffolds > 1 kb 312,353 194,682 128,638 123,582 65,748 275,637 14,828 5866
Med. contig length 254 162 1383
Med. scaf. Length 282 162 1296 3145 559 2991 1206 1561
Max contig length 97.41 kb 111.0 kb 201.7 kb
Max scaf. Length 400.4 kb 111.0 kb 311.0 kb 311.0 kb 600.7 kb 1.501 Mb 195.3 Mb 204.1 Mb
Contig N50 508 5668 10,589
Scaffold N50 1154 5670 12,505 13,160 45,461 11,408 90.22 Mb 74.86 Mb
Gene Models 17,772 15,984 27,554 16,354 16,494
Comp. BUSCOS 45% 54% 46% 90% 81%
Frag. BUSCOS 19% 18% 20% 4% 7%
  1. Assembly statistics for individual methods are given as well as the merged Bambusicola assembly. Comparative assembly metrics for other genomes included in this study were taken from primary literature