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Fig. 2 | BMC Genomics

Fig. 2

From: Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

Fig. 2

NJ bootstrap consensus tree for Gypsy based on the RT/RH (a), INT (b) regions. Only the branch containing the nototheniid Gypsy and the closest related amino acid sequences are presented. Except for GyNotoI and GyNotoRT, the seven nototheniid Gypsy families shown (bold font) group with bony fish sequences: Takifugu rubripes -sushi-ichi and Danio rerio -Amn-ni in addition to other vertebrate Gypsy sequences: Xenopus/Silurana tropicalis. Distances were calculated with the JTT model and a gamma distribution correction for amino acid. Support for individual clusters was evaluated using non-parametric bootstrapping with 1000 replicates. Only bootstraps over 60 are presented. Nodes with bootstraps < 60% were collapsed. See full tree in Additional file 4

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