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Table 3 Nucleic acid identity matrices of DIRS1 (a), Gypsy (b) and Copia (c) families across nototheniid species

From: Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

a

RT/RH

YNotoB

YNotoR

YNotoJ

YNotoV

   

YNotoB

88.2

48.3

49.4

49.6

   

YNotoR

 

91.4

45.7

50.1

   

YNotoJ

  

88.4

55.3

   

YNotoV

   

89.8

   

b

RT/RH

INT

GyNotoA

GyNotoB

GyNotoD

GyNotoE

GyNotoF

GyNotoH

GyNotoJ

GyNotoA

96.6

59.4

60.9

62.8

  

62.6

95.7

GyNotoB

62.6

92.2

68.9

64.5

  

57.9

89.7

GyNotoD

64.4

70.6

NA

64.8

  

59.4

NA

GyNotoE

65.7

66.3

69.2

96.6

  

60.4

96.0

GyNotoF

65.2

66.2

68.9

74.4

97.8

  

GyNotoH

65.5

61.7

63.3

62.6

63.8

93.8

 

GyNotoJ

      

88.3

c

RT/RH ± INT

CoNotoA

CoNotoB

     

CoNotoA

98.5

      

CoNotoB

 

95.9

     
  1. Note - Identity percentages are based on the nucleotide sequence alignments of identified nototheniid retrotransposons (see Additional file 9 for taxonomic sampling).TE intrafamily percentage identies across nototheniid species are indicated in bold. For Gypsy elements, identities calculated from RT/RH are presented above the table diagonal line and those based on INT are shown below. NA: not applicable because only one sequence identified for the family
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BMC Genomics

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