Table 2 Positively selected genes related to the cytoskeleton system and genetic information processing in Aldrovandia affinis
From: De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish
Gene | Function | Description | Adjusted P value |
|---|---|---|---|
Cytoskeleton system | |||
 COL18A2 | collagen alpha-2(I) chain | Basement membrane | 1.82E-04 |
 COL18A1 | collagen alpha-1 (XVIII) chain | Basement membrane | 3.48E-02 |
 C21orf2 | protein C21orf2 | Cytoskeleton organization | 1.04E-02 |
 DST | dystonin | Link actin | 4.24E-08 |
 GCP3 | gamma-tubulin complex component 3 | Microtubule nucleation | 8.42E-02 |
 CDK5RAP2 | CDK5 regulatory subunit-associated 2 | Microtubule nucleation | 7.35E-02 |
 PIKFYVE | 1-phosphatidylinositol 3-phosphate 5-kinase | Actin regulation | 3.20E-10 |
 FRMD6 | FERM domain-containing protein 6 | Actin and cytoskeleton regulation | 3.55E-02 |
 CKAP5 | cytoskeleton-associated 5 | Cytoskeleton regulation | 8.19E-02 |
 RMDN1 | regulator of microtubule dynamics 1 | Microtubule Regulation | 4.32E-02 |
 CLASP2 | CLIP-associating protein 2 | Actin and microtubule stabilization | 1.71E-02 |
 FRYL | furry homolog-like | Microtubule stabilization | 4.32E-02 |
 AGTPBP1 | cytosolic carboxypeptidase 1 | Tubulin | 1.03E-05 |
Genetic information processing | |||
 ERCC4 | DNA repair endonuclease XPF | DNA repair | 1.55E-02 |
 RFC1 | replication factor C subunit 1 | DNA replication | 3.09E-02 |
 DNAJC4 | DnaJ homolog subfamily C member 4 | Protein folding | 1.20E-03 |
 TAF1 | transcription initiation factor TFIID subunit 1 | Transcription | 5.80E-06 |
 GTF3C1 | general transcription factor 3C polypeptide 1 | Transcription | 1.29E-04 |
 TCEA1 | transcription elongation factor A 3 | Transcription | 2.58E-02 |
 HINFP | histone H4 transcription factor | Transcription | 1.22E-02 |
 DHX36 | ATP-dependent RNA helicase DHX36 | Transcription; cold shock | 7.51E-03 |
 EIF4B | eukaryotic translation initiation factor 4B | Translation | 1.82E-06 |