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Table 2 Positively selected genes related to the cytoskeleton system and genetic information processing in Aldrovandia affinis

From: De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Gene Function Description Adjusted P value
Cytoskeleton system
 COL18A2 collagen alpha-2(I) chain Basement membrane 1.82E-04
 COL18A1 collagen alpha-1 (XVIII) chain Basement membrane 3.48E-02
 C21orf2 protein C21orf2 Cytoskeleton organization 1.04E-02
 DST dystonin Link actin 4.24E-08
 GCP3 gamma-tubulin complex component 3 Microtubule nucleation 8.42E-02
 CDK5RAP2 CDK5 regulatory subunit-associated 2 Microtubule nucleation 7.35E-02
 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase Actin regulation 3.20E-10
 FRMD6 FERM domain-containing protein 6 Actin and cytoskeleton regulation 3.55E-02
 CKAP5 cytoskeleton-associated 5 Cytoskeleton regulation 8.19E-02
 RMDN1 regulator of microtubule dynamics 1 Microtubule Regulation 4.32E-02
 CLASP2 CLIP-associating protein 2 Actin and microtubule stabilization 1.71E-02
 FRYL furry homolog-like Microtubule stabilization 4.32E-02
 AGTPBP1 cytosolic carboxypeptidase 1 Tubulin 1.03E-05
Genetic information processing
 ERCC4 DNA repair endonuclease XPF DNA repair 1.55E-02
 RFC1 replication factor C subunit 1 DNA replication 3.09E-02
 DNAJC4 DnaJ homolog subfamily C member 4 Protein folding 1.20E-03
 TAF1 transcription initiation factor TFIID subunit 1 Transcription 5.80E-06
 GTF3C1 general transcription factor 3C polypeptide 1 Transcription 1.29E-04
 TCEA1 transcription elongation factor A 3 Transcription 2.58E-02
 HINFP histone H4 transcription factor Transcription 1.22E-02
 DHX36 ATP-dependent RNA helicase DHX36 Transcription; cold shock 7.51E-03
 EIF4B eukaryotic translation initiation factor 4B Translation 1.82E-06