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Table 2 CNVRs extracted from penile cancer data set using the query-based model with the Qloss query

From: CoNVaQ: a web tool for copy number variation-based association studies

     HPV-pos. HPV-neg.
Chr Start End Q-value loss (%) loss (%)
2 204245506 240688770 0.0120 21.4-35.7 0-7.41
4 9729740 24650257 0.2037 21.4 0
4 40058630 47037351 0.3377 21.4 0-7.41
5 140934280 147709268 0.3785 21.4-28.6 3.7-7.41
5 60380235 66930240 0.3835 21.4 3.7-7.41
5 76699391 82660330 0.3955 21.4 7.41
17 13330532 18617236 0.4525 21.4 0-7.41
5 126804776 131251586 0.4948 21.4 0-7.41
5 72910129 75996874 0.5863 21.4 7.41
17 19272468 22200000 0.6252 21.4 0-7.41
17 7262327 9931292 0.6633 21.4 0-7.41
17 567713 3136246 0.6793 21.4 7.41
3 46788991 49028973 0.6957 28.6 7.41
17 4566909 6490288 0.7335 21.4 3.7-7.41
5 108507593 110029337 0.7552 21.4-28.6 7.41
2 241709000 242951149 0.7762 21.4 3.7-7.41
3 52397990 53145339 0.8732 21.4-35.7 7.41
5 148184554 148894433 0.8770 21.4 3.7
3 14191317 14755952 0.8862 21.4 7.41
5 140011232 140459066 0.8912 21.4 3.7-7.41
5 92966197 93334626 0.8935 21.4 7.41
5 55167345 55283138 0.9103 21.4 7.41
5 122689458 122739532 0.9113 28.6 7.41
  1. Searching for regions with a loss of copy number in at least 20% of cases and at most 10% of controls. The two rightmost columns contain the frequency of copy nuber loss for the case and control groups, respectively