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Table 2 CNVRs extracted from penile cancer data set using the query-based model with the Qloss query

From: CoNVaQ: a web tool for copy number variation-based association studies

    

HPV-pos.

HPV-neg.

Chr

Start

End

Q-value

loss (%)

loss (%)

2

204245506

240688770

0.0120

21.4-35.7

0-7.41

4

9729740

24650257

0.2037

21.4

0

4

40058630

47037351

0.3377

21.4

0-7.41

5

140934280

147709268

0.3785

21.4-28.6

3.7-7.41

5

60380235

66930240

0.3835

21.4

3.7-7.41

5

76699391

82660330

0.3955

21.4

7.41

17

13330532

18617236

0.4525

21.4

0-7.41

5

126804776

131251586

0.4948

21.4

0-7.41

5

72910129

75996874

0.5863

21.4

7.41

17

19272468

22200000

0.6252

21.4

0-7.41

17

7262327

9931292

0.6633

21.4

0-7.41

17

567713

3136246

0.6793

21.4

7.41

3

46788991

49028973

0.6957

28.6

7.41

17

4566909

6490288

0.7335

21.4

3.7-7.41

5

108507593

110029337

0.7552

21.4-28.6

7.41

2

241709000

242951149

0.7762

21.4

3.7-7.41

3

52397990

53145339

0.8732

21.4-35.7

7.41

5

148184554

148894433

0.8770

21.4

3.7

3

14191317

14755952

0.8862

21.4

7.41

5

140011232

140459066

0.8912

21.4

3.7-7.41

5

92966197

93334626

0.8935

21.4

7.41

5

55167345

55283138

0.9103

21.4

7.41

5

122689458

122739532

0.9113

28.6

7.41

  1. Searching for regions with a loss of copy number in at least 20% of cases and at most 10% of controls. The two rightmost columns contain the frequency of copy nuber loss for the case and control groups, respectively
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BMC Genomics

ISSN: 1471-2164

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