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Table 3 CNVRs extracted from penile cancer data set using the query-based model with the Qgain query

From: CoNVaQ: a web tool for copy number variation-based association studies

     HPV-pos. HPV-neg.
Chr Start End Q-value gain (%) gain (%)
9 70091642 90376569 0.2762 21.4 7.41
9 13045258 21368309 0.4562 21.4 3.7-7.41
9 119273838 124799603 0.4885 21.4-28.6 7.41
9 33871385 37132743 0.5633 21.4-28.6 3.7-7.41
20 43179131 45592378 0.6395 21.4 7.41
6 13768413 16036680 0.6512 21.4 3.7
19 50012054 52236621 0.6655 21.4 0-7.41
9 91369725 93273440 0.7047 28.6 7.41
16 463336 1664507 0.7648 21.4-28.6 3.7-7.41
17 77682387 78774742 0.7680 21.4 7.41
6 31191394 31875972 0.7963 21.4 3.7
8 37606006 38160563 0.8532 21.4 0
20 33204027 33688992 0.8565 21.4 7.41
7 54865060 55296001 0.8600 21.4 7.41
20 42433913 42557332 0.8710 21.4 7.41
  1. Searching for regions with at least 20% of cases having a gain and at most 10% of controls having any kind of variation. The two rightmost columns contain the frequency of copy number gain for the case and control groups, respectively