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Table 4 CNVRs extracted from penile cancer data set using they query-based model with the \(Q_{\text {loss}}^{*}\) query

From: CoNVaQ: a web tool for copy number variation-based association studies

     HPV-positive HPV-negative
Chr Start End Q-value Gain (%) Loss (%) Gain (%) Loss (%)
2 233245552 234392866 0.0382 0 35.7 0 3.7
2 237307836 238138001 0.0473 0-7.14 35.7 0 3.7
  1. Searching for regions with a copy number loss in at least 30% of cases and any kind of variation in at most 5% of controls. Columns 5 and 6 show the frequency of copy number gain and loss for the case group, and columns 7 and 8 shows the frequency of gain and loss for the control group