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Table 4 CNVRs extracted from penile cancer data set using they query-based model with the \(Q_{\text {loss}}^{*}\) query

From: CoNVaQ: a web tool for copy number variation-based association studies

    

HPV-positive

HPV-negative

Chr

Start

End

Q-value

Gain (%)

Loss (%)

Gain (%)

Loss (%)

2

233245552

234392866

0.0382

0

35.7

0

3.7

2

237307836

238138001

0.0473

0-7.14

35.7

0

3.7

  1. Searching for regions with a copy number loss in at least 30% of cases and any kind of variation in at most 5% of controls. Columns 5 and 6 show the frequency of copy number gain and loss for the case group, and columns 7 and 8 shows the frequency of gain and loss for the control group
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BMC Genomics

ISSN: 1471-2164

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