Fig. 6

Cell wall degrading enzyme (CWDE) families in C. pseudoreteaudii. a. Hierarchical clustering of CWDE families from C. pseudoreteaudii and 13 fungal genomes. For fungi name abbreviations, see Fig. 2 and Fig. 4. Enzyme families are represented by their family number according to the carbohydrate-active enzyme database (http://www.cazy.org/). GH, glycoside hydrolase; CE, carbohydrate esterase; AA, auxiliary activities; CBM, carbohydrate-binding module; PL, polysaccharide lyase. Right side, known substrate of CWDE families. Overrepresented (white to red) and underrepresented (white to blue) domains are depicted as Z-scores for each family. Approximately unbiased (AU) P-values (%) are computed by 1000 bootstrap resamplings by using the R package pvclust. b. Plots of CWDE gene expression of each family in Eucalyptus tissue medium. Red circles, log2foldchange > 0; green circles, log2foldchange < 0. The substrates of CWDE families are indicated. The Tukey whiskers indicate 1.5 times the interquartile range from the 25th and 75th percentiles