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Table 2 SDM defense responsive DEGs with P value < 0.001 and log2 fold change > 2 or < − 2

From: Transcriptomic analysis of genes in soybean in response to Peronospora manshurica infection

Terms

Gene ID(Glyma)

Read counts

Log2 fold change

KF1ni

KF1i

JL1ni

JL1i

KF1 vs. KF1ni

JL1ni vs. KF1ni

JL1i vs. KF1ni

JL1i vs. JL1ni

Plant hormone signal transduction

11

        

AUX

2

        

AUX/IAA

13g18910

115.33

968.76

213.16

2345.50

3.07

0.89

4.35

3.46

GH3

02g13910

43.49

373.79

84.81

398.11

3.10

0.96

3.19

2.23

Brassinosteroid

1

        

BAK1

05g24770

108.11

1407.49

1045.10

560.86

3.70

3.27

2.38

−0.90

Ethylene

1

        

EBF1

04g20330

32.24

586.80

184.34

2353.68

4.19

2.52

6.19

3.67

Jasmonate

7

        

JAZ1

01g41290

78.44

1286.07

44.57

542.98

4.04

−0.82

2.79

3.61

 

09g08290

150.06

7641.92

382.12

8135.14

5.67

1.35

5.76

4.41

 

11g04130

24.65

631.92

1.67

315.76

4.68

−3.89

3.68

7.57

 

13g17180

56.70

2397.55

73.33

3688.38

5.40

0.37

6.02

5.65

 

15g19840

265.77

7262.01

432.97

10,025.92

4.78

0.70

5.24

4.53

 

17g05540

7.67

306.83

19.98

222.05

5.32

1.38

4.86

3.47

JAZ6

07g04630

646.79

2896.85

524.87

3135.59

2.16

−0.30

2.28

2.16

Plant/pathogen interaction

31

        

Oxidation

8

        

Glyoxylase

07g03560

91.03

227.06

313.50

2652.58

1.32

1.78

4.87

3.08

Isocitrate lyase

06g45950

10.77

873.50

1262.32

9650.25

6.34

6.87

9.81

2.93

 

12g10780

116.44

1546.11

1259.75

14,926.85

3.73

3.44

7.00

3.57

Peroxidase

01g32270

0.00

2.33

2.50

73.06

Infa

Infa

Infa

4.87

 

09g41440

1.55

120.58

4.75

227.35

7.04

1.62

7.20

5.58

Peroxidase 62-related

08g19180

1.03

451.44

4.23

364.86

8.77

2.04

8.47

6.43

 

15g05810

0.52

67.97

1.21

5.65

7.04

1.22

3.44

2.22

 

15g05820

74.82

3413.46

94.09

577.25

5.51

0.33

2.95

2.62

Calmodulin

12

        

ACA4

03g31420

202.96

1875.99

760.97

4474.46

3.20

1.91

4.46

2.56

CML

10g32190

14.00

788.07

195.32

626.99

5.81

3.80

5.49

1.68

 

10g00470

6.00

270.76

94.11

1064.77

5.50

3.97

7.47

3.50

CML24

18g04450

346.73

1903.08

30.25

301.65

2.46

−3.52

−0.20

3.32

CML44

13G09550

30.16

736.89

159.44

1104.95

4.61

2.40

5.20

2.80

CML1-related

05g13900

2618.57

36,645.18

4992.34

30,027.30

3.81

0.93

3.52

2.59

CML-like

03g39170

19.28

853.73

214.17

4922.86

5.47

3.47

8.00

4.52

 

03g39180

57.14

1443.30

31.25

8369.36

4.66

−0.87

7.20

8.06

CML24-like

05g33880

172.33

3470.54

438.99

3944.01

4.33

1.35

4.52

3.17

 

08g05810

149.12

12,677.75

239.19

13,111.02

6.41

0.68

6.46

5.78

CML44-like

14g24810

4.90

702.56

71.12

517.40

7.16

3.86

6.72

2.86

CML-dependent

11g13740

191.84

12.92

7.56

1.41

−3.89

−4.67

−7.10

−2.42

PR proteins

11

        

PR proteins

01g31730

0.52

74.89

11.38

2174.33

7.18

4.45

12.03

7.59

 

03g30420

3.22

305.06

507.98

1023.66

6.56

7.30

8.31

1.02

 

06g40710

133.49

903.17

0.90

7.30

2.76

−7.22

−4.19

3.01

 

16g06940

165.99

1996.03

834.75

2864.73

3.59

2.33

4.11

1.78

FLS2

08g08810

49.37

3483.31

19.60

613.61

6.14

−1.33

3.64

4.97

 

08g08781

2.19

161.18

0.00

26.67

6.20

0.00

3.61

Infa

LOX1

13g31280

136.67

1071.67

68.13

87.54

2.97

−1.00

−0.64

0.36

RPW8

01g32825

12.50

473.23

5.45

60.99

5.24

−1.20

2.29

3.49

PEPR1

10g33970

13.48

321.96

38.23

693.94

4.58

1.50

5.69

4.19

PEPR1/2

12g00960

66.44

797.47

340.30

710.24

3.59

2.36

3.42

1.06

 

13g32630

17.61

367.59

348.28

1724.20

4.38

4.31

6.61

2.31

Transcription factors

10

        

bHLH

1

        

bHLH103

15g07010

27.74

354.74

71.50

993.14

3.68

1.37

5.16

3.80

MYB

6

        

MYB-related

09g29800

216.98

1442.26

121.66

1074.53

2.73

−0.83

2.31

3.14

 

10g05560

39.98

288.14

20.12

270.80

2.85

−0.99

2.76

3.75

MYB32- related

02g41180

36.70

93.29

72.15

685.06

1.35

0.98

4.22

3.25

MYB-related TF LHY

03g42260

183.04

981.94

69.66

598.94

2.42

−1.39

1.71

3.10

 

19g45030

215.40

1042.06

125.26

1205.87

2.27

−0.78

2.49

3.27

MYB-like

03g34110

15.35

189.20

68.03

911.41

3.62

2.15

5.89

3.74

WRKY

3

        

WRKY4

01g31921

43.63

765.05

139.06

2145.04

4.13

1.67

5.62

3.95

WRKY31

04g06495

4.12

145.38

103.06

341.37

5.14

4.65

6.37

1.73

WRKY156

17g04710

7.48

154.07

138.48

52.69

4.36

4.21

2.82

−1.39

  1. infa represents infinitive fold change
  2. Bold data represent the total number of DEGs belong to different terms