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Table 2 SDM defense responsive DEGs with P value < 0.001 and log2 fold change > 2 or < − 2

From: Transcriptomic analysis of genes in soybean in response to Peronospora manshurica infection

Terms Gene ID(Glyma) Read counts Log2 fold change
KF1ni KF1i JL1ni JL1i KF1 vs. KF1ni JL1ni vs. KF1ni JL1i vs. KF1ni JL1i vs. JL1ni
Plant hormone signal transduction 11         
AUX 2         
AUX/IAA 13g18910 115.33 968.76 213.16 2345.50 3.07 0.89 4.35 3.46
GH3 02g13910 43.49 373.79 84.81 398.11 3.10 0.96 3.19 2.23
Brassinosteroid 1         
BAK1 05g24770 108.11 1407.49 1045.10 560.86 3.70 3.27 2.38 −0.90
Ethylene 1         
EBF1 04g20330 32.24 586.80 184.34 2353.68 4.19 2.52 6.19 3.67
Jasmonate 7         
JAZ1 01g41290 78.44 1286.07 44.57 542.98 4.04 −0.82 2.79 3.61
  09g08290 150.06 7641.92 382.12 8135.14 5.67 1.35 5.76 4.41
  11g04130 24.65 631.92 1.67 315.76 4.68 −3.89 3.68 7.57
  13g17180 56.70 2397.55 73.33 3688.38 5.40 0.37 6.02 5.65
  15g19840 265.77 7262.01 432.97 10,025.92 4.78 0.70 5.24 4.53
  17g05540 7.67 306.83 19.98 222.05 5.32 1.38 4.86 3.47
JAZ6 07g04630 646.79 2896.85 524.87 3135.59 2.16 −0.30 2.28 2.16
Plant/pathogen interaction 31         
Oxidation 8         
Glyoxylase 07g03560 91.03 227.06 313.50 2652.58 1.32 1.78 4.87 3.08
Isocitrate lyase 06g45950 10.77 873.50 1262.32 9650.25 6.34 6.87 9.81 2.93
  12g10780 116.44 1546.11 1259.75 14,926.85 3.73 3.44 7.00 3.57
Peroxidase 01g32270 0.00 2.33 2.50 73.06 Infa Infa Infa 4.87
  09g41440 1.55 120.58 4.75 227.35 7.04 1.62 7.20 5.58
Peroxidase 62-related 08g19180 1.03 451.44 4.23 364.86 8.77 2.04 8.47 6.43
  15g05810 0.52 67.97 1.21 5.65 7.04 1.22 3.44 2.22
  15g05820 74.82 3413.46 94.09 577.25 5.51 0.33 2.95 2.62
Calmodulin 12         
ACA4 03g31420 202.96 1875.99 760.97 4474.46 3.20 1.91 4.46 2.56
CML 10g32190 14.00 788.07 195.32 626.99 5.81 3.80 5.49 1.68
  10g00470 6.00 270.76 94.11 1064.77 5.50 3.97 7.47 3.50
CML24 18g04450 346.73 1903.08 30.25 301.65 2.46 −3.52 −0.20 3.32
CML44 13G09550 30.16 736.89 159.44 1104.95 4.61 2.40 5.20 2.80
CML1-related 05g13900 2618.57 36,645.18 4992.34 30,027.30 3.81 0.93 3.52 2.59
CML-like 03g39170 19.28 853.73 214.17 4922.86 5.47 3.47 8.00 4.52
  03g39180 57.14 1443.30 31.25 8369.36 4.66 −0.87 7.20 8.06
CML24-like 05g33880 172.33 3470.54 438.99 3944.01 4.33 1.35 4.52 3.17
  08g05810 149.12 12,677.75 239.19 13,111.02 6.41 0.68 6.46 5.78
CML44-like 14g24810 4.90 702.56 71.12 517.40 7.16 3.86 6.72 2.86
CML-dependent 11g13740 191.84 12.92 7.56 1.41 −3.89 −4.67 −7.10 −2.42
PR proteins 11         
PR proteins 01g31730 0.52 74.89 11.38 2174.33 7.18 4.45 12.03 7.59
  03g30420 3.22 305.06 507.98 1023.66 6.56 7.30 8.31 1.02
  06g40710 133.49 903.17 0.90 7.30 2.76 −7.22 −4.19 3.01
  16g06940 165.99 1996.03 834.75 2864.73 3.59 2.33 4.11 1.78
FLS2 08g08810 49.37 3483.31 19.60 613.61 6.14 −1.33 3.64 4.97
  08g08781 2.19 161.18 0.00 26.67 6.20 0.00 3.61 Infa
LOX1 13g31280 136.67 1071.67 68.13 87.54 2.97 −1.00 −0.64 0.36
RPW8 01g32825 12.50 473.23 5.45 60.99 5.24 −1.20 2.29 3.49
PEPR1 10g33970 13.48 321.96 38.23 693.94 4.58 1.50 5.69 4.19
PEPR1/2 12g00960 66.44 797.47 340.30 710.24 3.59 2.36 3.42 1.06
  13g32630 17.61 367.59 348.28 1724.20 4.38 4.31 6.61 2.31
Transcription factors 10         
bHLH 1         
bHLH103 15g07010 27.74 354.74 71.50 993.14 3.68 1.37 5.16 3.80
MYB 6         
MYB-related 09g29800 216.98 1442.26 121.66 1074.53 2.73 −0.83 2.31 3.14
  10g05560 39.98 288.14 20.12 270.80 2.85 −0.99 2.76 3.75
MYB32- related 02g41180 36.70 93.29 72.15 685.06 1.35 0.98 4.22 3.25
MYB-related TF LHY 03g42260 183.04 981.94 69.66 598.94 2.42 −1.39 1.71 3.10
  19g45030 215.40 1042.06 125.26 1205.87 2.27 −0.78 2.49 3.27
MYB-like 03g34110 15.35 189.20 68.03 911.41 3.62 2.15 5.89 3.74
WRKY 3         
WRKY4 01g31921 43.63 765.05 139.06 2145.04 4.13 1.67 5.62 3.95
WRKY31 04g06495 4.12 145.38 103.06 341.37 5.14 4.65 6.37 1.73
WRKY156 17g04710 7.48 154.07 138.48 52.69 4.36 4.21 2.82 −1.39
  1. infa represents infinitive fold change
  2. Bold data represent the total number of DEGs belong to different terms