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Table 2 The annotated differentially expressed genes enriched in the PPAR signaling pathway or ECM–receptor interaction

From: Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

Pathway

Up-down regulation

GLTPEF vs. STHPEF

GLTSUF vs. STHSUF

GLTTAF vs. STHTAF

PPAR signaling pathway

Up

LOC101114861, LOC101102230, CRABP1, PLTP, SCD5, FADS2, ACSBG2, OLR1, CPT1C, C1QTNF3, COL8A1, C1QTNF7, LOC101116326, CBLN3, LOC101114586, PDLIM2

LOC101102230, LOC101113077, SLC27A1, SLC27A5, SLC27A6, PLTP, OLR1, CPT1A, CPT1B, ANGPTL4, COL8A1, C1QTNF3, COL8A2, C1QTNF7, CBLN3, CAPRIN2, C1QTNF5, C1QTNF2, NEBL, PDLIM2, SORBS3

LOC101102230, LOC101113339, LOC101113077, SLC27A6, SLC27A5, PLTP, SCD5, LOC101102230, OLR1, CPT1B, CPT1C, CPT1A, ANGPTL4, PLIN2, FABP4, C1QTNF7, LOC101116326, CAPRIN2, C1QTNF5, LOC101114586, NEBL, PDLIM2

Down

LOC101113339, FABP4, FABP5, SLC27A6, RXRG, SCD, ANGPTL4, PLIN1, PLIN5, ADIPOQ, UCP1

FABP5, CRABP2, CRABP1, SLC27A2, RXRA, SCD, FADS2, CYB5A, ACSL6, ACSL5, ACSL1, ACSBG1, PLIN2, PLIN5, PLIN3, ADIPOQ, UCP1

FABP12, CRABP2, RXRG, RXRA, SCD, FADS2, CYB5A, ACSL6, ACSL1, ACSL5, ACSL3, LOC101117914, SORBS1, UCP1

ECM-receptor interaction

Up

COL4A6, COL4A5, COL4A3, COL23A1, ARID5A, COL1A1, COL13A1, COL1A2, LAMB3, MEGF9, LAMA5, RELN, THSD1, ISM1, FN1, ITGA5, TNC, ANGPTL1, TNXB, TENM3, ITGA8, ITGA9, ITGA11, ZAN, FCGBP, ITGBL1, ITGB4

COL6A5, COL6A6, COL6A1, COL6A3, COL6A2, PIMREG, KRBA1, TNKS1BP1, ARID5A, EHBP1L1, AHNAK, LAMB3, LAMA2, LAMB1, RELN, THBS1, COMP, THBS2, THBS3, THBS4, THSD1, FN1, ITGA5, SDK2, ANGPTL6, ANGPTL1, TNXB, TNC, IGDCC4, ITGA8, ITGA9, ITGA11, ITGB3, ITGBL1, ITGA2, ITGA4, SPP1, PRG4, ITGB7, ITGB5

COL9A3, COL2A1, COL13A1, COL11A2, TNKS1BP1,COL6A5, COL23A1, EHBP1L1, LAMB3, LAMB1, LAMA2, RELN, THBS2, THBS1, SCARF1, TNXB, ITGA8, VWF, ITGA2, SPP1, VTN, TGB7, ITGB5

Down

WFIKKN2, WAP, PIMREG, LAMB4, COMP

COL24A1, GRTP1, COL11A1, LOC101117707, LAMB4, SSPO, C5H19orf70, ITGA3

COL24A1, PIMREG, GRTP1, COL5A1, COL3A1, COL5A3, COL5A2, COL11A1, COL1A2, COL1A1, LAMC2, LAMB4, LOC101117707, MEGF9, ATRN, SM1, LOC101120408, TENM4, TENM1, ITGA1, ITGA6, TGAV, ITGB8

  1. The differentially expressed genes (DE genes) were generated from comparisons, GLTPEF vs. STHPEF, GLTSUF vs. STHSUF, and GLTTAF vs. STHTAF. The PPAR signaling pathway and ECM–receptor interaction were identified through KEGG pathway analysis. “Up-down regulation” means that the genes were up- or down-regulated in STH as compared to their expression levels in GLT sheep