Table 1 Assembly statistics for the genomes of the Bgh isolates DH14 and RACE1
DH14 v3 (contigs)a | DH14 v3 (scaffolds)a | DH14 v4b | RACE1 v1 | |
|---|---|---|---|---|
Assembly Statistics | ||||
Number of sequences | 15,056 | 6843 | 318 | 99 |
Minimum size | 358 | 668 | 3069 | 16,042 |
1st Quartile | 1206 | 1105 | 15,960 | 52,946 |
Median | 1707 | 1254 | 23,353 | 358,063 |
Mean | 5838 | 17,350 | 391,476 | 1,176,524 |
3rd Quartile | 4940 | 1573 | 41,901 | 1,602,884 |
Maximum size | 156,171 | 9,686,481 | 9,852,665 | 9,429,963 |
Total | 87,906,467 | 118,726,170 | 124,489,486 | 116,475,897 |
N50 | 18,030 | 2,030,396 | 4,574,654 | 3,906,310 |
N90 | 1634 | 38,110 | 752,644 | 832,094 |
N95 | 1227 | 1521 | 57,430 | 443,704 |
Gap Statistics | ||||
Number of gaps | 4713 | 120 | ||
Minimum size | 26 | 110 | ||
1st Quartile | 425 | 1835 | ||
Median | 1710 | 4,44 | ||
Mean | 6524 | 5725 | ||
3rd Quartile | 6679 | 8,27 | ||
Maximum size | 36,100 | 24,554 | ||
Total | 30,749,686 | 687,104 | ||
N50 | 27,231 | 9159 | ||
N90 | 3672 | 2895 | ||
N95 | 1997 | 2138 | ||