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Fig. 2 | BMC Genomics

Fig. 2

From: A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Fig. 2

Evaluation of the detection step of PiRATE with genomic data of Arabidopsis thaliana. a) Percentage of TE families detected in A. thaliana. For each TE order (x-axis) is indicated the percentage of TE families detected with a complete length (coverage score ≥ 70%, white bars) or detected with a partial and a complete length (coverage score ≥ 40%, black bars). The x-axis indicates the number of TE families for each order; “n-a” means non-autonomous. b) Comparison of the percentage of TE families of A. thaliana detected by PiRATE (Step 1), RepARK, RepeatExplorer, dnaPipeTE, RepeatScout, RepeatMasker, LTRharvest and TEdenovo. For each tool is indicated the percentages of TE families of A. thaliana detected with a complete length (coverage score ≥ 70%, white bars) or detected with a partial and a complete length (coverage score ≥ 40%, black bars). The x-axis indicates the tools and nature of the input data

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BMC Genomics

ISSN: 1471-2164

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