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Fig. 3 | BMC Genomics

Fig. 3

From: A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Fig. 3

Comparison of the contribution of the four TE detection approaches of PiRATE on the detection of the TE families of Tisochrysis lutea, depending on the input data. For each TE detection approach, we calculated the number of TE families detected with the largest length and divide this number by the total of detected TE families of T. lutea. The input dataset was either the draft genome assembly of T. lutea and raw Illumina data of T. lutea (white bars) or the new genome assembly of T. lutea and raw Illumina data of T. lutea (black bars). The similarity-based detection, structural-based detection and the repetitiveness-based detection use a genome assembly as input data. The last approach builds repeated elements from raw Illumina data

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BMC Genomics

ISSN: 1471-2164

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