Orders/ Superfamilies | Number of families (f) or detected sequences (s) | Number of potentially autonomous TEs | Proportion of the potentially autonomous TEs (%) | Proportion of total genome (%) | ||
---|---|---|---|---|---|---|
Class I | a | LTR/Copia | 6 f | 45 | 0.37 | 1.09 |
LTR/Gypsy | 4 f | 242 | 2.56 | 4.65 | ||
LINE/L1 | 14 f | 59 | 0.25 | 3.87 | ||
n-a | SINE | 14 s | 0.04 | |||
LTR/LARD | 17 s | 0.76 | ||||
LTR/TRIM | 240 s | 5.48 | ||||
Total Class I | 15.89 | |||||
Class II | a | TIR/hAT | 129 f | 145 | 0.41 | 2.12 |
TIR/Mariner | 8 f | 41 | 0.11 | 0.19 | ||
TIR/Harbinger | 7 f | 26 | 0.05 | 0.34 | ||
TIR/PiggyBac | 7 f | 14 | 0.04 | 0.26 | ||
n-a | MITE | 188 s | 2.04 | |||
Total Class II | 4.95 | |||||
Total TEs | 572 | 3.79 | 20.84 |