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Table 1 Diversity and proportion of transposable element orders and classes in the genome assembly of Tisochrysis lutea. The abbreviations “a” and “n-a” indicate autonomous and non-autonomous transposable elements respectively

From: A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

  Orders/ Superfamilies Number of families (f) or detected sequences (s) Number of potentially autonomous TEs Proportion of the potentially autonomous TEs (%) Proportion of total genome (%)
Class I a LTR/Copia 6 f 45 0.37 1.09
LTR/Gypsy 4 f 242 2.56 4.65
LINE/L1 14 f 59 0.25 3.87
n-a SINE 14 s    0.04
LTR/LARD 17 s    0.76
LTR/TRIM 240 s    5.48
Total Class I       15.89
Class II a TIR/hAT 129 f 145 0.41 2.12
TIR/Mariner 8 f 41 0.11 0.19
TIR/Harbinger 7 f 26 0.05 0.34
TIR/PiggyBac 7 f 14 0.04 0.26
n-a MITE 188 s    2.04
Total Class II       4.95
Total TEs     572 3.79 20.84