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Table 1 Diversity and proportion of transposable element orders and classes in the genome assembly of Tisochrysis lutea. The abbreviations “a” and “n-a” indicate autonomous and non-autonomous transposable elements respectively

From: A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

 

Orders/ Superfamilies

Number of families (f) or detected sequences (s)

Number of potentially autonomous TEs

Proportion of the potentially autonomous TEs (%)

Proportion of total genome (%)

Class I

a

LTR/Copia

6 f

45

0.37

1.09

LTR/Gypsy

4 f

242

2.56

4.65

LINE/L1

14 f

59

0.25

3.87

n-a

SINE

14 s

  

0.04

LTR/LARD

17 s

  

0.76

LTR/TRIM

240 s

  

5.48

Total Class I

     

15.89

Class II

a

TIR/hAT

129 f

145

0.41

2.12

TIR/Mariner

8 f

41

0.11

0.19

TIR/Harbinger

7 f

26

0.05

0.34

TIR/PiggyBac

7 f

14

0.04

0.26

n-a

MITE

188 s

  

2.04

Total Class II

     

4.95

Total TEs

   

572

3.79

20.84