Fig. 7
From: Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data
Comparisons between ribosome-associated lncRNAs and ribosome-free lncRNAs in HeLa cells (a) Cellular localization analysis. The fold changes of expression values were calculated between the nuclear and the cytoplasmic compartments to quantify the localization. (See Additional file 18 for the raw data used to generate this kernel density plot.) (b) Nonsense mediated decay (NMD) analysis. As UPF1 is an important NMD factor, we can use the fold changes of expression values between samples from a UPF1 knockdown and control to express NMD sensitivity. (See Additional file 19 for the raw data used to generate this kernel density plot.) The corresponding mean values are shown by vertical dashed lines; p-values were calculated using Welch’s t-test