RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

Table 5 Significant pathways for DEGs associated with the intake main effect identified using IPA

Pathway	P-value^a	DEGs in Pathway
4-hydroxyproline degradation I	0.00803	HOGA1
Methylglyoxal degradation I	0.012	HAGHL
D-glucuronate degradation I	0.012	DCXR
Glycerol-3-phosphate shuttle	0.016	GPD1
Arginine degradation I (arginase pathway)	0.016	OAT
Arginine biosynthesis IV	0.0239	OAT
Proline biosynthesis II (from arginine)	0.0239	OAT
Arginine degradation VI (arginase 2 pathway)	0.0239	OAT
Glycerol degradation I	0.0239	GPD1
CNTF signaling	0.0267	CNTFR, HRAS
Citrulline biosynthesis	0.0318	OAT
PPARa/RXRa activation	0.0362	CHD5, GPD1, HRAS

ISSN: 1471-2164