Skip to main content

Advertisement

Table 1 Summary of the assembly and annotation of the Sacha Inchi transcriptome

From: De novo transcriptome assembly of the eight major organs of Sacha Inchi (Plukenetia volubilis) and the identification of genes involved in α-linolenic acid metabolism

  No. of sequences
Assembly  
 Total number of unigenes 124,750
 Total bases (Mb) 145
 Average unigene length (bp) 851
 N50 (bp) 1909
 Number of unigenes (≥ 500 bp) 54,675
 Number of unigenes (≥ 1 kb) 29,591
Annotation No. of matched unigenes (percentage)
 Transcript BLASTx against NR 67,832 (54.37%)
 Transcript BLASTx against UniRef90 68,063 (54.56%)
 Transcript BLASTx against TAIR10 42,109 (33.75%)
 Transcript BLASTx against KOG 55,403 (44.41%)
 Transcript BLASTx against SwissProt 43,501 (34.87%)
 All annotated transcripts 70,124 (56.23%)
 Transcripts identified in all five databases 35,381 (28.36%)