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Table 3 Joint analyses on differentially expressed genes and proteins in qRT-PCR and comparative proteomics

From: Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Group Stage Protein name Gene name DEPs in comparative proteomics Differential expression genes in qRT-PCR Molecular function Biological process
Group I-subgroup 1 E7 Tyrosyl-tRNA synthetase, cytoplasmic YARS Y (Fat > Lean) Y (Fat > Lean) Aminoacyl-tRNA ligase activity Amino acid synthesis
E17 Intestinal fatty acid-binding protein FABP2 Y (Fat > Lean) Y (Fat > Lean) Lipid binding, transporter activity Lipid transport
Group I-subgroup 2 E7 lysyl-tRNA synthetase KARS Y (Fat > Lean) Y (Lean > Fat) Aminoacyl-tRNA ligase activity Amino acid synthesis
Group II-subgroup 1 E7 Thioredoxin domain-containing protein 5 TXNDC5 Y (Fat > Lean) N (Fat > Lean) Disulfide oxidoreductase activity Protein folding
E7 Sulfotransferase SULT Y (Lean > Fat) N (Lean > Fat) Sulfotransferase activity, transferase activity Sulfuryl transfer
E7 PREDICTED: inosine triphosphate pyrophosphatase ITPA Y (Lean > Fat) N (Lean > Fat) Pyrophosphatase activity Nucleotide metabolic process
E7 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 NDUFB10 Y (Lean > Fat) N (Lean > Fat) Binding, NADH dehydrogenase (quinone) activity Energy metabolism
E7 Nucleoside diphosphate kinase (protein spot 58) NDK Y (Lean > Fat) N (Lean > Fat) Nucleoside diphosphate kinase activity Lipid transport
E12 Heat shock protein beta-1 HSPB1 Y (Lean > Fat) N (Lean > Fat) Molecular chaperone-mediated protein folding Lipid clearance
Group II-subgroup 2 E7 Nucleoside diphosphate kinase (protein spot 40) NDK Y (Fat > Lean) N (Lean > Fat) Nucleoside diphosphate kinase activity Lipid transport
E7 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial SDHA Y (Fat > Lean) N (Lean > Fat) Adenyl nucleotide binding, succinate dehydrogenase activity Energy metabolism
E7 Heat shock protein beta-1 HSPB1 Y (Lean > Fat) N (Fat > Lean) Molecular chaperone-mediated protein folding Lipid clearance
E12 Sulfotransferase SULT Y (Lean > Fat) N (Fat > Lean) Sulfotransferase activity, transferase activity Sulfuryl transfer
E14 Coronin-1C CORO1C Y (Lean > Fat) N (Fat> Lean) Cytoskeletal protein binding Actin cytoskeleton organization
E17 Apolipoprotein A-I ApoA-I Y (Lean > Fat) N (Fat > Lean) Cholesterol binding, cholesterol transporter activity Lipid transport
E21 Nucleoside diphosphate kinase (protein spot 40) NDK Y (Fat > Lean) N (Lean > Fat) Nucleoside diphosphate kinase activity Lipid transport
  1. Y and N represent yes and no, respectively
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BMC Genomics

ISSN: 1471-2164

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