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Table 3 List of candidate genes within the genomic windows associated with abdominal fat and skin traits that exhibited GO terms related to lipid metabolic processes in the TT Reference Population

From: A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

GGA (location, Mb) Trait associated Gene Name Ensembl Gene ID GO Term (GO Accession)a
5 (38) ABF, ABFP JDP2 ENSGALG00000010322 negative regulation of fat cell differentiation (GO:0045599)
15 (6) SKINW, SKINP PTPN11 ENSGALG00000004821 lipid metabolic process (GO:0006629)
triglyceride metabolic process (GO:0006641)
MVK ENSGALG00000013848 lipid metabolic process (GO:0006629)
cholesterol metabolic process (GO:0008203)
Novel gene ENSGALG00000005043 fatty acid biosynthetic process (GO:0006633)
acetyl-CoA carboxylase activity (GO:0003989)
20 (5) ABF FITM2 ENSGALG00000026285 lipid storage (GO:0019915)
lipid particle organization (GO:0034389)
PLCG1 ENSGALG00000003750 lipid metabolic process (GO:0006629)
lipid catabolic process (GO:0016042)
HNF4A ENSGALG00000004285 lipid metabolic process (GO:0006629)
regulation of lipid metabolic process (GO:0019216)
lipid homeostasis (GO:0055088)
fatty acid binding (GO:0005504)
24 (5) SKINW APOA4 ENSGALG00000007109 lipid homeostasis (GO:0055088)
multicellular organismal lipid catabolic process (GO:0044240)
positive regulation of triglyceride catabolic process (GO:0010898)
cholesterol homeostasis (GO:0042632)
cholesterol metabolic process (GO:0008203)
positive regulation of fatty acid biosynthetic process (GO:0045723)
APOA5 ENSGALG00000014368 triglyceride homeostasis (GO:0070328)
positive regulation of lipid catabolic process (GO:0050996)
positive regulation of fatty acid biosynthetic process (GO:0045723)
APOA1 ENSGALG00000007114 lipid transport (GO:0006869)
lipid metabolic process (GO:0006629)
lipid storage (GO:0019915)
cholesterol homeostasis (GO:0042632)
26 (1) ABF, ABFP Novel gene ENSGALG00000000477 lipid metabolic process (GO:0006629)
lipid catabolic process (GO:0016042)
lipid particle (GO:0005811)
lipid homeostasis (GO:0055088)
Novel gene ENSGALG00000000483 lipid catabolic process (GO:0016042)
lipid particle (GO:0005811)
lipid homeostasis (GO:0055088)
triglyceride lipase activity (GO:0004806)
triglyceride catabolic process (GO:0019433)
ADIPOR1 ENSGALG00000000094 regulation of lipid metabolic process (GO:0019216)
fatty acid oxidation (GO:0019395)
  1. aAll GO terms were obtained from BioMart (Ensembl Genes 90 Database)