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Table 2 Overview of sequencing, assembly and annotation

From: Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets

Metrix Unfiltered Filtered
Transcripts 625,845 56,246
 Genes 467,824 39,180
 GC% 44.28 44.13
 Median length (bp) 389 910
 Average length (bp) 922.7 1430.28
 Min (bp) 201 201
 Max (bp) 58,543 24,803
 Total number of bases 577,467,800 80,447,300
Annotation
 Blastx hits with uniprot 278,406 45,853
 Blastx hits with uniref90 377,852 46,552
 Blastp hits with uniprot 227,499 41,578
 Blastp hits with uniref90 280,111 42,257
 Proteins with signal peptides 20,540 2226
 Proteins with transmembrane helices 28,482 5034
 Proteins with PFAM domains 216,290 32,907
 Proteins with GO terms 71,304 45,454
 Proteins with KEGG 181,895 41,993
  1. Transcript filter: < 1 FPKM, isoform < 1%