Skip to main content

Table 4 Summary of differentially expressed genes related to nutrition

From: Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets

Classification/Transcript

Name (best blast)

Gene fold change as compared to the low fish meal diet (FM5)

FM20

FM5 + 5% TH

FM5 + 5% SH

FM5 + 5% MH

Digestion related

 TRINITY DN79635 c16 g28

2-phosphoxylose phosphatase 1

−1.85

   

 TRINITY DN74666 c1 g3

Aminopeptidase N

1.97

  

2.92

 TRINITY DN74666 c0 g1

Aminopeptidase N

   

2.80

 TRINITY DN76691 c3 g3

Chymotrypsin-C

 

2.30

  

 TRINITY DN66951 c0 g2

Dipeptidase 1

   

2.68

 TRINITY DN75551 c3 g1

Dipeptidyl peptidase 4

1.68

  

1.96

 TRINITY DN71008 c5 g1

Meprin A subunit alpha

1.54

   

 TRINITY DN72685 c5 g4

Meprin A subunit beta

1.90

  

2.07

 TRINITY DN75683 c2 g1

Meprin A subunit beta

1.64

1.98

 

2.04

 TRINITY DN6986 c0 g1

Pepsin A

 

3.11

2.7

4.79

 TRINITY DN78404 c2 g1

Phospholipase B1, membrane-associated

   

3.61

 TRINITY DN77910 c4 g1

Phospholipase B1, membrane-associated

   

4.33

 TRINITY DN56338 c0 g1

Trypsinogen-like protein 3

   

−1.90

 TRINITY DN74387 c3 g1

Xaa-Pro aminopeptidase 2

2.26

  

2.61

 TRINITY DN75167 c0 g2

Xaa-Pro dipeptidase

   

1.72

Carbohydrate related

 TRINITY DN74193 c6 g1

2-oxoglutarate dehydrogenase, mitochondrial

1.82

   

 TRINITY DN73012 c2 g2

ADP-dependent glucokinase

   

−2.19

 TRINITY DN77048 c0 g5

Beta-galactosidase

   

−2.18

 TRINITY DN77546 c2 g14

Beta-hexosaminidase subunit beta

   

3.15

 TRINITY DN76262 c5 g1

CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2

6.76

 

5.3

6.90

 TRINITY DN76669 c2 g6

CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

2.40

   

 TRINITY DN67442 c0 g3

Fructose-1,6-bisphosphatase 1

 

1.99

  

 TRINITY DN79451 c1 g1

Fructose-bisphosphate aldolase B

 

2.05

 

2.17

 TRINITY DN77757 c0 g1

Glucose-6-phosphatase

   

2.48

 TRINITY DN78836 c3 g3

Glucose-6-phosphatase

 

2.99

 

3.71

 TRINITY DN77732 c1 g2

Lysosomal alpha-mannosidase

   

2.13

 TRINITY DN75851 c2 g4

Maltase-glucoamylase, intestinal

2.10

2.31

 

3.03

 TRINITY DN75571 c0 g1

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

1.70

  

2.34

 TRINITY DN66475 c0 g1

UDP-glucose 4-epimerase

−2.69

  

−2.53

 TRINITY DN75517 c0 g1

UDP-glucose 6-dehydrogenase

   

−4.48

Starvation related

 TRINITY DN71986 c0 g1

Angiopoietin-related protein 4

−1.71

  

−2.88

 TRINITY DN65255 c0 g1

Collectrin

   

4.96

 TRINITY DN69741 c0 g2

DEP domain-containing mTOR-interacting protein

2.10

  

1.87

 TRINITY DN79325 c3 g4

Folliculin-interacting protein 1

1.69

   

 TRINITY DN53239 c0 g1

Neuropeptide Y

   

−3.68

 TRINITY DN59469 c0 g1

Neuropeptide YY-A

   

−2.59

 TRINITY DN76722 c3 g1

Serine/threonine-protein kinase ULK2

2.57

   

Carrier

 TRINITY DN79318 c11 g9

14 kDa apolipoprotein

−1.64

  

−2.91

 TRINITY DN79318 c11 g7

14 kDa apolipoprotein

−1.79

  

−2.92

 TRINITY DN69453 c0 g1

Apolipoprotein A1/A4/E domain (pfam)

−3.09

  

−7.19

 TRINITY DN71711 c0 g1

Apolipoprotein A-IV

−2.02

  

− 2.84

 TRINITY DN70740 c0 g1

Apolipoprotein A-IV

−3.28

 

−2.1

−5.05

 TRINITY DN79385 c0 g8

Apolipoprotein B-100

 

2.57

  

 TRINITY DN73752 c8 g3

Apolipoprotein C-I (ApoC-1) pfam

   

−3.87

 TRINITY DN78962 c1 g23

Apolipoprotein C-II (pfam)

   

−2.29

 TRINITY DN78962 c1 g36

Apolipoprotein C-II (pfam)

−1.66

  

−2.54

 TRINITY DN78793 c2 g9

Apolipoprotein Eb

   

−4.81

 TRINITY DN63420 c0 g2

Aquaporin FA-CHIP

   

2.00

 TRINITY DN76968 c1 g2

Asc-type amino acid transporter 1

1.70

   

 TRINITY DN70677 c12 g4

ATP-binding cassette sub-family A member 1

   

1.98

 TRINITY DN78213 c1 g1

Chloride anion exchanger

   

2.74

 TRINITY DN68770 c0 g2

Chloride intracellular channel protein 4

   

2.01

 TRINITY DN67686 c1 g1

Chloride intracellular channel protein 5

   

1.77

 TRINITY DN69002 c1 g2

Large neutral amino acids transporter small subunit 4

   

1.96

 TRINITY DN79534 c0 g1

MLN64 N-terminal domain homolog

   

2.39

 TRINITY DN75016 c2 g2

Monocarboxylate transporter 12-B

   

1.81

 TRINITY DN71474 c7 g3

Na(+)/H(+) exchange regulatory cofactor NHE-RF1

   

2.64

 TRINITY DN74500 c2 g1

Na(+)/H(+) exchange regulatory cofactor NHE-RF3

   

1.94

 TRINITY DN79418 c0 g1

Niemann-Pick C1-like protein 1

   

2.65

 TRINITY DN76301 c3 g1

Niemann-Pick C1-like protein 1

   

1.85

 TRINITY DN75948 c4 g4

Phospholipid-transporting ATPase IA

2.26

   

 TRINITY DN75214 c1 g9

Prolyl endopeptidase-like

   

1.85

 TRINITY DN77239 c2 g2

Sodium/hydrogen exchanger 7

   

4.65

 TRINITY DN67206 c1 g1

Sodium/myo-inositol cotransporter

−3.06

  

−3.55

 TRINITY DN67731 c1 g1

Sodium/potassium-transporting ATPase subunit alpha-1

 

2.22

 

2.99

 TRINITY DN79640 c8 g1

Sodium-dependent neutral amino acid transporter B(0)AT1

2.83

 

2.7

3.96

 TRINITY DN71667 c2 g2

Sodium-dependent phosphate transport protein 2B

  

2.3

3.25

 TRINITY DN69556 c1 g3

Solute carrier family 13 member 2

2.15

  

2.78

 TRINITY DN60850 c0 g1

Solute carrier family 13 member 5

2.34

 

2.1

2.73

 TRINITY DN68059 c1 g4

Solute carrier family 15 member 1

 

1.78

  

 TRINITY DN73228 c5 g1

Solute carrier family 2, facilitated glucose transporter member 2

  

2.56

 TRINITY DN72783 c3 g1

Solute carrier family 22 member 6

 

−3.83

  

 TRINITY DN79648 c5 g9

Solute carrier family 40 member 1

   

2.60

 TRINITY DN73224 c8 g2

Zinc transporter 1

   

2.54

  1. Values correspond to fold changes between diets and the low fish meal control diet. Positive values indicate upregulation, and negative values down regulation. FM5 5% fish meal diet, FM20 20% fish meal diet, TH tilapia hydrolysate diet, SH shrimp hydrolysate diet, MH mixed hydrolysate diet