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Table 6 Summary of differentially expressed genes related to fish health status

From: Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets

Classification/Transcript

Name (best blast)

Gene fold change as compared to the low fish meal diet (FM5)

FM20

FM5 + 5% TH

FM5 + 5% SH

FM5 + 5% MH

Interferon related

 TRINITY DN69994 c1 g3

Gamma-interferon-inducible lysosomal thiol reductase

   

2.39

 TRINITY DN67652 c1 g1

Interferon alpha-inducible protein 27-like protein 2A

  

−2.2

−2.22

 TRINITY DN78765 c2 g3

Interferon stimulated gene 15

  

−3.4

 

 TRINITY DN78866 c1 g8

Interferon-induced GTP-binding protein Mx

 

−2.72

 

−2.56

 TRINITY DN78866 c1 g9

Interferon-induced GTP-binding protein Mx

 

−3.37

−2.7

−2.41

 TRINITY DN78532 c1 g14

Interferon-inducible protein 56

  

−2.3

−2.23

Histocompatibility antigen related

 TRINITY DN79419 c7 g6

Class I histocompatibility antigen, B alpha chain

1.95

  

2.98

 TRINITY DN79651 c13 g9

H−2 class I histocompatibility antigen, K-K alpha chain

   

3.85

 TRINITY DN78477 c2 g7

H-2 class II histocompatibility antigen gamma chain

1.95

  

2.74

 TRINITY DN72971 c0 g4

Rano class II histocompatibility antigen, A beta chain

2.20

  

2.45

 TRINITY DN72971 c0 g3

Rano class II histocompatibility antigen, A beta chain

   

3.32

Lectin related

 TRINITY DN69402 c2 g1

Fucolectin

4.15

 

3.9

5.35

 TRINITY DN69402 c2 g2

Fucolectin

6.15

 

2.9

7.67

 TRINITY DN65160 c0 g3

Fucolectin-1

2.46

  

3.39

 TRINITY DN65160 c0 g4

Fucolectin-1

  

4.2

7.27

 TRINITY DN78379 c3 g2

Fucolectin-1

   

5.03

 TRINITY DN78379 c3 g7

Fucolectin-1

2.54

  

2.38

 TRINITY DN69906 c1 g1

Nattectin

   

3.37

Pentraxin related

 TRINITY DN77743 c1 g13

C-reactive protein

  

2.9

 

 TRINITY DN77743 c1 g7

C-reactive protein

3.73

3.25

2.5

4.47

 TRINITY DN14972 c0 g1

Serum amyloid P-component

5.12

 

2.8

5.87

Serum complement related

 TRINITY DN60272 c0 g1

C1q domain (pfam)

1.53

   

 TRINITY DN60272 c0 g1

C1q domain (pfam)

1.53

   

 TRINITY DN78829 c1 g1

C1q domain (pfam)

3.53

  

4.69

 TRINITY DN77811 c0 g3

C1q domain (pfam)

   

2.91

 TRINITY DN73741 c7 g14

C1q-like 23 kDa protein

 

6.85

  

 TRINITY DN67406 c0 g1

C1q-like 23 kDa protein

7.94

  

10.81

 TRINITY DN79561 c2 g21

C1q-like 23 kDa protein

6.25

  

10.35

TNF-α related

 TRINITY DN59663 c0 g1

Tumor necrosis factor alpha-induced protein 8-like protein 3

   

2.31

 TRINITY DN75139 c4 g2

Tumor necrosis factor ligand superfamily member 10

2.20

 

2.3

3.09

 TRINITY DN69734 c2 g1

Tumor necrosis factor receptor superfamily member 11A

   

2.82

Cellular stress related

 TRINITY DN71217 c2 g2

Glutathione peroxidase 2

   

−2.58

 TRINITY DN79626 c5 g2

Phospholipid hydroperoxide glutathione peroxidase, mitochondrial

−2.21

  

−3.81

 TRINITY DN79626 c5 g6

Phospholipid hydroperoxide glutathione peroxidase, mitochondrial

   

−3.27

 TRINITY DN79626 c5 g1

Phospholipid hydroperoxide glutathione peroxidase, mitochondrial

−2.56

  

−4.22

 TRINITY DN76439 c4 g1

Gamma-glutamyltranspeptidase 1

2.72

  

4.40

 TRINITY DN63786 c0 g2

Sestrin-1

   

2.12

 TRINITY DN77226 c0 g3

Selenocysteine lyase

   

−3.08

 TRINITY DN68233 c1 g1

DNA damage-inducible transcript 4-like protein

−6.45

 

−3.2

−3.41

 TRINITY DN77069 c1 g2

DNA repair protein complementing XP-A cells homolog

−2.82

  

−2.64

 TRINITY DN76110 c0 g10

Tyrosyl-DNA phosphodiesterase 2

   

−2.57

  1. Values correspond to fold changes between diets and the low fish meal control diet. Positive values indicate upregulation, and negative values down regulation. FM5 5% fish meal diet, FM20 20% fish meal diet, TH tilapia hydrolysate diet, SH shrimp hydrolysate diet, MH mixed hydrolysate diet