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Table 6 Summary of differentially expressed genes related to fish health status

From: Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets

Classification/Transcript Name (best blast) Gene fold change as compared to the low fish meal diet (FM5)
FM20 FM5 + 5% TH FM5 + 5% SH FM5 + 5% MH
Interferon related
 TRINITY DN69994 c1 g3 Gamma-interferon-inducible lysosomal thiol reductase     2.39
 TRINITY DN67652 c1 g1 Interferon alpha-inducible protein 27-like protein 2A    −2.2 −2.22
 TRINITY DN78765 c2 g3 Interferon stimulated gene 15    −3.4  
 TRINITY DN78866 c1 g8 Interferon-induced GTP-binding protein Mx   −2.72   −2.56
 TRINITY DN78866 c1 g9 Interferon-induced GTP-binding protein Mx   −3.37 −2.7 −2.41
 TRINITY DN78532 c1 g14 Interferon-inducible protein 56    −2.3 −2.23
Histocompatibility antigen related
 TRINITY DN79419 c7 g6 Class I histocompatibility antigen, B alpha chain 1.95    2.98
 TRINITY DN79651 c13 g9 H−2 class I histocompatibility antigen, K-K alpha chain     3.85
 TRINITY DN78477 c2 g7 H-2 class II histocompatibility antigen gamma chain 1.95    2.74
 TRINITY DN72971 c0 g4 Rano class II histocompatibility antigen, A beta chain 2.20    2.45
 TRINITY DN72971 c0 g3 Rano class II histocompatibility antigen, A beta chain     3.32
Lectin related
 TRINITY DN69402 c2 g1 Fucolectin 4.15   3.9 5.35
 TRINITY DN69402 c2 g2 Fucolectin 6.15   2.9 7.67
 TRINITY DN65160 c0 g3 Fucolectin-1 2.46    3.39
 TRINITY DN65160 c0 g4 Fucolectin-1    4.2 7.27
 TRINITY DN78379 c3 g2 Fucolectin-1     5.03
 TRINITY DN78379 c3 g7 Fucolectin-1 2.54    2.38
 TRINITY DN69906 c1 g1 Nattectin     3.37
Pentraxin related
 TRINITY DN77743 c1 g13 C-reactive protein    2.9  
 TRINITY DN77743 c1 g7 C-reactive protein 3.73 3.25 2.5 4.47
 TRINITY DN14972 c0 g1 Serum amyloid P-component 5.12   2.8 5.87
Serum complement related
 TRINITY DN60272 c0 g1 C1q domain (pfam) 1.53    
 TRINITY DN60272 c0 g1 C1q domain (pfam) 1.53    
 TRINITY DN78829 c1 g1 C1q domain (pfam) 3.53    4.69
 TRINITY DN77811 c0 g3 C1q domain (pfam)     2.91
 TRINITY DN73741 c7 g14 C1q-like 23 kDa protein   6.85   
 TRINITY DN67406 c0 g1 C1q-like 23 kDa protein 7.94    10.81
 TRINITY DN79561 c2 g21 C1q-like 23 kDa protein 6.25    10.35
TNF-α related
 TRINITY DN59663 c0 g1 Tumor necrosis factor alpha-induced protein 8-like protein 3     2.31
 TRINITY DN75139 c4 g2 Tumor necrosis factor ligand superfamily member 10 2.20   2.3 3.09
 TRINITY DN69734 c2 g1 Tumor necrosis factor receptor superfamily member 11A     2.82
Cellular stress related
 TRINITY DN71217 c2 g2 Glutathione peroxidase 2     −2.58
 TRINITY DN79626 c5 g2 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial −2.21    −3.81
 TRINITY DN79626 c5 g6 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial     −3.27
 TRINITY DN79626 c5 g1 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial −2.56    −4.22
 TRINITY DN76439 c4 g1 Gamma-glutamyltranspeptidase 1 2.72    4.40
 TRINITY DN63786 c0 g2 Sestrin-1     2.12
 TRINITY DN77226 c0 g3 Selenocysteine lyase     −3.08
 TRINITY DN68233 c1 g1 DNA damage-inducible transcript 4-like protein −6.45   −3.2 −3.41
 TRINITY DN77069 c1 g2 DNA repair protein complementing XP-A cells homolog −2.82    −2.64
 TRINITY DN76110 c0 g10 Tyrosyl-DNA phosphodiesterase 2     −2.57
  1. Values correspond to fold changes between diets and the low fish meal control diet. Positive values indicate upregulation, and negative values down regulation. FM5 5% fish meal diet, FM20 20% fish meal diet, TH tilapia hydrolysate diet, SH shrimp hydrolysate diet, MH mixed hydrolysate diet