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Table 1 Sequencing, assembly, and annotation statistics for the transcriptomes of M. micrantha, M. cordata, and M. cordifolia

From: Comparative transcriptome analysis of the invasive weed Mikania micrantha with its native congeners provides insights into genetic basis underlying successful invasion

 

M. micrantha

M. cordata

M. cordifolia

Total raw reads (million)

41.26

48.76

46.76

Total filtered reads (million)

41.04

48.76

45.53

% G/C

43.98

45.32

48.50

Number of contigs

75,179

76,344

93,872

Number of non-redundant sequences

62,145

56,409

53,330

Number of unigenes

52,179

55,835

52,983

Maximum length of unigenes (bp)

6763

14,332

10,914

Average length of unigenes (bp)

643

843

1016

N50 of unigenes (bp)

1047

1406

1563

Number of total annotated unigenes

32,418 (62.13%)

31,944 (57.21%)

40,991 (77.37%)

Number of unigenes with NR annotations

29,934 (57.37%)

29,829 (53.42%)

39,576 (75.00%)

Number of unigenes assigned with GO terms

19,945 (38.22%)

27,561 (49.36%)

31,178 (58.85%)

Number of unigenes assigned to KEGG pathways

10,787 (20.67%)

9164 (16.41%)

23,381 (44.13%)

Number of unigenes with KOG annotations

11,127 (21.32%)

11,497 (20.59%)

29,854 (56.35%)