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Table 2 List of analysed FT candidate genes, sequence length, number of specific PCR fragments and detected mutations

From: Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes

Gene Chr. position Number of specific PCR fragments Sequence length in bp CDS length in bp Gene length in bp CDS/gene length ratio Detected mutations Number of polymorphic sites
CBF-D1 5D 1 709 639 639 1.00 no 0
CBF-A3 5A 1 790 741 741 1.00 yes 4
CBF-A5 7A 1 1027 633 633 1.00 yes 6
CBF-A10 5A 1 867 720 720 1.00 yes 2
CBF-A13 5A 1 855 720 720 1.00 yes 6
CBF-A14 5A 2 610/748 639 639 1.00 yes 6
CBF-A15 5A 1 786 726 726 1.00 yes 7
CBF-A18 6A 1 1045 738 738 1.00 yes 37
Dhn1 5D 1 936 420 638 0.66 no 0
VRN-A1 5A 4 1039/1097/621/770 735 11,414 0.06 yes 15
VRN-B1 5B 5 600/817/662/467/1077 735 5498 0.13 yes 24
VRN-D1 5D 4 814/1359/1429/705 735 11,550 0.06 yes 2
VRN-D2 4D 2 976/534 639 1650 0.39 no 0
VRN-B3 7B 2 1602/994 534 1258 0.42 yes 1
Cab 5A 1 728 n.a. n.a. n.a. yes 28
Dem 6B/6D 1 616 n.a. n.a. n.a. no 0
Tacr7 2B 1 765 n.a. n.a. n.a. yes 3
PPD-B1 2B 6 1600/954/927/571/773/378 1995 3053 0.65 yes 5
PPD-D1 2D 3 726/1094/966 1983 3141 0.63 yes 109
total   39 34,034 13,332 43,758 0.30   255
  1. Chr. chromosome, bp base pairs, CDS coding DNA sequence, n.a. not available