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Table 3 Polymorphic candidate genes, location of polymorphisms, amino acid change and haplotype diversity

From: Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes

Gene Chr. Acces-sions Poly-morphic sites SNPs in-dels Promotor Intron Exon 3` UTR Non-coding Non-syno-nymous Syno-nymous Haplo-types Hd
CBF-A3 5A 235 4 4 0 0 0 4 0 0 3 1 2 0.30
CBF-A5 7A 235 6 5 1 1 0 5 0 1 3 2 4 0.54
CBF-A10 5A 235 2 2 0   0 2 0 0 1 1 2 0.30
CBF-A13 5A 235 6 4 2 1 0 5 0 2 4 0 3 0.30
CBF-A14 5A 235 6 5 1 5 0 1 0 5 0 1 3 0.30
CBF-A15 5A 235 7 6 1 0 0 7 0 0 5 2 2 0.30
CBF-A18 6A 235 37 34 3 1 0 25 11 12 12 13 3 0.20
VRN-A1 5A 235 15 10 5 7 6 2 0 13 2 0 6 0.19
VRN-B1 5B 235 24 21 3 20 4 0 0 24 0 0 5 0.07
VRN-D1 5D 235 2 2 0 0 1 0 1 2 0 0 3 0.14
VRN-B3 7B 235 1 1 0 0 0 1 0 0 1 0 3 0.50
Cab 5A 235 28 24 4 5 0 12 11 16 12 0 6 0.64
Tacr7 2B 235 3 2 1 0 0 1 2 2 1 0 3 0.40
PPD-B1 2B 235 5 5 0 1 0 4 0 1 3 1 6 0.37
PPD-D1 2D 235 109 97 12 1 53 55 0 54 22 33 6 0.68
total    255 222 33 42 64 124 25 132 69 54 58  
  1. Chr. chromosome, SNP single nucleotide polymorphism, indel insertion-deletion, UTR untranslated region, Hd Haplotype Diversity