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Table 5 Statistics of haplotypes significantly associated to FT

From: Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes

Haplotype name

Chr.

P-value

-Log of P

Haplotype

FT effect of haplotypes in %

Observationsa

CBF-A3 ex.

5A

2.37E-11

10.63

1

2

    

15.01

0.00

    

193

42

    

CBF-A5 pro.

7A

7.17E-3

2.14

1

2

    

4.44

0.00

    

82

143

    

CBF-A5 ex.

7A

1.58E-2

1.80

1

2

3

   

19.51

18.09

0.00

   

204

28

3

   

CBF-A5

7A

5.16E-4

3.29

1

2

3

4

  

24.18

19.29

18.88

0.00

  

55

27

140

3

  

CBF-A10 ex.

5A

2.37E-11

10.63

1

2

    

15.01

0.00

    

193

42

    

CBF-A13 ex.

5A

1.57E-10

9.80

1

2

3

   

15.22

0.00

8.47

   

193

41

1

   

CBF-A13 pro.

5A

2.37E-11

10.63

1

2

    

15.01

0.00

    

193

42

    

CBF-A13

5A

1.57E-10

9.80

1

2

3

   

15.22

0.00

8.47

   

193

41

1

   

CBF-A14 pro.

5A

2.37E-11

10.63

1

2

    

15.01

0.00

    

193

42

    

CBF-A14 ex.

5A

1.90E-10

9.72

1

2

3

   

17.01

2.11

0.00

   

193

40

2

   

CBF-A14

5A

1.90E-10

9.72

1

2

3

   

17.01

2.11

0.00

   

193

40

2

   

CBF-A15 ex.

5A

2.37E-11

10.63

1

2

    

15.01

0.00

    

193

42

    

CBF-A18

6A

6.88E-3

2.16

1

2

3

   

9.32

6.66

0.00

   

209

9

17

   

PPD-B1 pro.

2B

4.23E-2

1.37

1

2

    

5.50

0.00

    

213

22

    

PPD-B1 ex.

2B

3.69E-7

6.43

1

2

3

4

  

18.97

0.00

28.28

33.39

  

3

5

207

20

  

PPD-B1

2B

1.31E-7

6.88

1

2

3

4

5

 

19.03

0.00

33.95

29.07

22.63

 

3

5

20

185

22

 

PPD-D1 pro.

2D

6.95E-3

2.16

1

2

3

   

14.38

10.75

0.00

   

141

80

4

   

PPD-D1 in.

2D

3.93E-2

1.41

1

2

3

   

18.66

19.56

0.00

   

162

69

3

   

PPD-D1 ex.

2D

7.05E-3

2.15

1

2

3

   

21.80

18.18

0.00

   

68

163

3

   

PPD-D1

2D

3.78E-3

2.42

1

2

3

4

5

6

21.47

3.77

19.28

16.13

0.00

20.55

68

3

69

90

3

1

VRN-A1 ex.

5A

2.57E-4

3.59

1

2

3

4

  

0.00

0.68

13.12

11.89

  

9

15

2

209

  

VRN-A1

5A

2.87E-3

2.54

1

2

3

4

5

6

14.13

15.90

2.26

15.30

0.00

8.90

207

2

13

2

6

1

  1. Chr. chromosome, ex. exon, pro. Promotor, in. intron, P probability, Log logarithm, FT frost tolerance
  2. anumber of genotypes per allele