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Table 5 Statistics of haplotypes significantly associated to FT

From: Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes

Haplotype name Chr. P-value -Log of P Haplotype FT effect of haplotypes in % Observationsa
CBF-A3 ex. 5A 2.37E-11 10.63 1 2      15.01 0.00      193 42     
CBF-A5 pro. 7A 7.17E-3 2.14 1 2      4.44 0.00      82 143     
CBF-A5 ex. 7A 1.58E-2 1.80 1 2 3     19.51 18.09 0.00     204 28 3    
CBF-A5 7A 5.16E-4 3.29 1 2 3 4    24.18 19.29 18.88 0.00    55 27 140 3   
CBF-A10 ex. 5A 2.37E-11 10.63 1 2      15.01 0.00      193 42     
CBF-A13 ex. 5A 1.57E-10 9.80 1 2 3     15.22 0.00 8.47     193 41 1    
CBF-A13 pro. 5A 2.37E-11 10.63 1 2      15.01 0.00      193 42     
CBF-A13 5A 1.57E-10 9.80 1 2 3     15.22 0.00 8.47     193 41 1    
CBF-A14 pro. 5A 2.37E-11 10.63 1 2      15.01 0.00      193 42     
CBF-A14 ex. 5A 1.90E-10 9.72 1 2 3     17.01 2.11 0.00     193 40 2    
CBF-A14 5A 1.90E-10 9.72 1 2 3     17.01 2.11 0.00     193 40 2    
CBF-A15 ex. 5A 2.37E-11 10.63 1 2      15.01 0.00      193 42     
CBF-A18 6A 6.88E-3 2.16 1 2 3     9.32 6.66 0.00     209 9 17    
PPD-B1 pro. 2B 4.23E-2 1.37 1 2      5.50 0.00      213 22     
PPD-B1 ex. 2B 3.69E-7 6.43 1 2 3 4    18.97 0.00 28.28 33.39    3 5 207 20   
PPD-B1 2B 1.31E-7 6.88 1 2 3 4 5   19.03 0.00 33.95 29.07 22.63   3 5 20 185 22  
PPD-D1 pro. 2D 6.95E-3 2.16 1 2 3     14.38 10.75 0.00     141 80 4    
PPD-D1 in. 2D 3.93E-2 1.41 1 2 3     18.66 19.56 0.00     162 69 3    
PPD-D1 ex. 2D 7.05E-3 2.15 1 2 3     21.80 18.18 0.00     68 163 3    
PPD-D1 2D 3.78E-3 2.42 1 2 3 4 5 6 21.47 3.77 19.28 16.13 0.00 20.55 68 3 69 90 3 1
VRN-A1 ex. 5A 2.57E-4 3.59 1 2 3 4    0.00 0.68 13.12 11.89    9 15 2 209   
VRN-A1 5A 2.87E-3 2.54 1 2 3 4 5 6 14.13 15.90 2.26 15.30 0.00 8.90 207 2 13 2 6 1
  1. Chr. chromosome, ex. exon, pro. Promotor, in. intron, P probability, Log logarithm, FT frost tolerance
  2. anumber of genotypes per allele