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Table 4 Alignment of DNA sequences found upstream of S. mitis type strain and SK321 putative late genes. Distances to the start codon of first ORF are shown

From: High-resolution profiles of the Streptococcus mitis CSP signaling pathway reveal core and strain-specific regulated genes

 

Function in competence

Annotation

Gene ID

Consensus

  
    

TTT

0

TACGAATA

  

SigX Core Orthologues [29]

DNA recombination

coiA

SM12261_1411

TTTTT

−0-

TACGAATA

−22-

ATG

SMSK321_na

TTTTT

−0-

TACGAATA

−21-

ATG

dprA

SM12261_1607

TTTTTT

−0-

TACGAATA

−21-

ATG

SMSK321_0695

TTTTT

−0-

TACGAATA

−21-

ATG

ssbB

SM12231_0826

TTTT

−1-

TgCGAATA

−25-

ATG

SMSK321_1193

TTT

−2-

TACGAATA

−20-

ATG

comGA

SM12261_0634

TTTTT

−9-

TgCGAATA

−25-

ATG

SMSK321_1273

TTTTT

−9-

TgCGAATA

−20-

ATG

DNA uptake

comFA

SM12261_0765

TTTTT

−9-

TACGAATA

−25-

ATG

SMSK321_1614

TTTT

−0-

TACGAATA

−7-

ATG

cilC

SM12261_0438

TTTTT

−0-

TACGAATA

−7-

ATG

SMSK321_1050

TTTTT

−0-

TACGAATA

−7-

ATG

comEA

SM12261_1388

TTTTTT

−8-

TACGAATA

−19-

ATG

SMSK321_0421

TTTTTT

−8-

TACGAATA

−19-

ATG

Fratricide

cbpD

SM12261_0760

TTTTTTT

−1-

TcCGAATA

−57-

ATG

SMSK321_1609

TTTTTTT

−1-

TcCGAATA

−49-

ATG

Unknown functions

dut

SM12261_0019

TTTT

−0-

TcCGAATA

−48-

ATG

SMSK321_0340

TTTT

−0-

TcCGAATA

−48-

ATG

ccs50

SM12261_0563

TTT

−18-

aACGAATA

−74-

ATG

SMSK321_1204

TTT

−18-

aACGAATA

−74-

ATG

pilC

SM12261_1288

TTT

−0-

TACGAATA

−30-

ATG

SMSK321_0286

TTT

−0-

TACGAATA

−30-

ATG

radC

SM12261_1568

TTTTT

−9-

cACGAATA

−20-

ATG

SMSK321_0646

TTTT

−10-

cACGAATA

−20-

ATG

cinA

SM12261_0915

TTTTTT

−8-

TACGAATA

−17-

ATG

SMSK321_1657

TTTTTT

−8-

TACGAATA

−17-

ATG

Non-Core Orthologues

Unknown function

5′ ccs4

SM12261_5’0853

TTT

−0-

TACGAATA

−19-

ATG

SMSK321_5’1482

TTT

−0-

TACGAATA

−19-

ATG

ccs 16

SM12261_5’0025

TTT

−0-

TcCGAATA

−68-

ATG

SMSK321_5’0346

TTT

−0-

TcCGAATA

−14-

GTG

Non-Core Without Orthologues

Putative bacteriocin

Cib-like operon

SM12261_0044

TTT

−0-

TtCGAATA

−33-

ATG

SMSK321_1305

TTTTT

−0-

TtCGAATA

− 229

ATG

Unknown function

Lipoprotein

SM12261_0750

TTTT

−0-

TACGAATA

−147

ATG

SMSK321_1599

TTTT

−2-

TACGAATA

−147

ATG

Hypot. protein

SMSK321_1184

TTTT

−12-

aACGAATA

−13-

GTG

  1. Bases in agreement to cinbox (SigX-box) consensus in bold [33]. Bases divergent from the consensus are represented by lower case letters. Only the first genes within each induced transcriptionally active region are shown
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BMC Genomics

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