Skip to main content

Table 2 Organismal Systems pathways and DEGs involved

From: Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

Pathway DEGs genes (51) Pathway ID Level 2
Longevity regulating pathway - multiple species Unigene32292, Unigene35344, Unigene35501 ko04213 Aging
Longevity regulating pathway Unigene32292, Unigene35501, CL3443.Contig1 ko04211 Aging
Longevity regulating pathway - worm CL3933.Contig2 ko04212 Aging
Cardiac muscle contraction Unigene11331 ko04260 Circulatory system
Adrenergic signaling in cardiomyocytes Unigene11331, Unigene44161 ko04261 Circulatory system
Vascular smooth muscle contraction Unigene44161 ko04270 Circulatory system
Osteoclast differentiation Unigene19465, Unigene31660 ko04380 Development
Axon guidance Unigene40814 ko04360 Development
Dorso-ventral axis formation Unigene34154 ko04320 Development
Protein digestion and absorption Unigene12705, CL6154.Contig2, Unigene38622, CL922.Contig5, Unigene11331, CL922.Contig9, CL452.Contig3, CL922.Contig7, Unigene17070, CL3933.Contig2 ko04974 Digestive system
Bile secretion Unigene12705, Unigene33785, Unigene38622, Unigene11331, CL979.Contig3, CL979.Contig1, Unigene17070 ko04976 Digestive system
Mineral absorption Unigene12705, Unigene15443, Unigene38622, Unigene11331, Unigene17070 ko04978 Digestive system
Carbohydrate digestion and absorption Unigene11331 ko04973 Digestive system
Vitamin digestion and absorption CL4600.Contig3 ko04977 Digestive system
Salivary secretion Unigene10578, Unigene11331 ko04970 Digestive system
Gastric acid secretion Unigene11331 ko04971 Digestive system
Pancreatic secretion Unigene11331 ko04972 Digestive system
Thyroid hormone signaling pathway Unigene33785, Unigene111, Unigene113, Unigene41655, Unigene36212, Unigene31721, Unigene11331, Unigene112, CL979.Contig3, CL979.Contig1, Unigene17270 ko04919 Endocrine system
Adipocytokine signaling pathway Unigene33785, CL3443.Contig1, CL979.Contig3, CL979.Contig1 ko04920 Endocrine system
Insulin secretion Unigene33785, Unigene11331, CL979.Contig3, CL979.Contig1, CL5287.Contig1 ko04911 Endocrine system
Thyroid hormone synthesis Unigene10157, Unigene27634, Unigene11857, Unigene11331 ko04918 Endocrine system
PPAR signaling pathway CL1683.Contig3, CL1683.Contig5, CL2638.Contig2 ko03320 Endocrine system
Estrogen signaling pathway Unigene10157, Unigene35344, Unigene27634 ko04915 Endocrine system
Progesterone-mediated oocyte maturation Unigene10157, Unigene27634 ko04914 Endocrine system
Glucagon signaling pathway Unigene33785, CL979.Contig3, CL979.Contig1 ko04922 Endocrine system
Renin-angiotensin system Unigene49236 ko04614 Endocrine system
Insulin signaling pathway Unigene32292, Unigene35501, Unigene44161 ko04910 Endocrine system
Oxytocin signaling pathway Unigene44161 ko04921 Endocrine system
GnRH signaling pathway CL6599.Contig1 ko04912 Endocrine system
Proximal tubule bicarbonate reclamation Unigene12705, Unigene15693, Unigene38622, Unigene11331, Unigene17070 ko04964 Excretory system
Aldosterone-regulated sodium reabsorption Unigene11331 ko04960 Excretory system
Endocrine and other factor-regulated calcium reabsorption Unigene11331 ko04961 Excretory system
Antigen processing and presentation Unigene10157, Unigene35344, Unigene27634, Unigene11857, Unigene41750 ko04612 Immune system
NOD-like receptor signaling pathway Unigene10157, Unigene27634 ko04621 Immune system
Hematopoietic cell lineage Unigene15456, Unigene47891l, Unigene15457 ko04640 Immune system
B cell receptor signaling pathway Unigene15456, Unigene47891, Unigene15457 ko04662 Immune system
Platelet activation Unigene44161 ko04611 Immune system
Fc gamma R-mediated phagocytosis CL6599.Contig1, CL4852.Contig1 ko04666 Immune system
Long-term potentiation Unigene44161 ko04720 Nervous system
GABAergic synapse CL3399.Contig2 ko04727 Nervous system
Dopaminergic synapse Unigene44161 ko04728 Nervous system
Glutamatergic synapse CL6599.Contig1, Unigene5252, CL3399.Contig2 ko04724 Nervous system
Phototransduction CL6217.Contig3, CL41.Contig2 ko04744 Sensory system
Olfactory transduction CL6217.Contig3, CL41.Contig2 ko04740 Sensory system
Inflammatory mediator regulation of TRP channels Unigene44161 ko04750 Sensory system