Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

Wang, Huan; Tang, Lei; Wei, Hongling; Lu, Junkai; Mu, Changkao; Wang, Chunlin

doi:10.1186/s12864-018-4803-x

Table 2 Organismal Systems pathways and DEGs involved

From: Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

Pathway	DEGs genes (51)	Pathway ID	Level 2
Longevity regulating pathway - multiple species	Unigene32292, Unigene35344, Unigene35501	ko04213	Aging
Longevity regulating pathway	Unigene32292, Unigene35501, CL3443.Contig1	ko04211	Aging
Longevity regulating pathway - worm	CL3933.Contig2	ko04212	Aging
Cardiac muscle contraction	Unigene11331	ko04260	Circulatory system
Adrenergic signaling in cardiomyocytes	Unigene11331, Unigene44161	ko04261	Circulatory system
Vascular smooth muscle contraction	Unigene44161	ko04270	Circulatory system
Osteoclast differentiation	Unigene19465, Unigene31660	ko04380	Development
Axon guidance	Unigene40814	ko04360	Development
Dorso-ventral axis formation	Unigene34154	ko04320	Development
Protein digestion and absorption	Unigene12705, CL6154.Contig2, Unigene38622, CL922.Contig5, Unigene11331, CL922.Contig9, CL452.Contig3, CL922.Contig7, Unigene17070, CL3933.Contig2	ko04974	Digestive system
Bile secretion	Unigene12705, Unigene33785, Unigene38622, Unigene11331, CL979.Contig3, CL979.Contig1, Unigene17070	ko04976	Digestive system
Mineral absorption	Unigene12705, Unigene15443, Unigene38622, Unigene11331, Unigene17070	ko04978	Digestive system
Carbohydrate digestion and absorption	Unigene11331	ko04973	Digestive system
Vitamin digestion and absorption	CL4600.Contig3	ko04977	Digestive system
Salivary secretion	Unigene10578, Unigene11331	ko04970	Digestive system
Gastric acid secretion	Unigene11331	ko04971	Digestive system
Pancreatic secretion	Unigene11331	ko04972	Digestive system
Thyroid hormone signaling pathway	Unigene33785, Unigene111, Unigene113, Unigene41655, Unigene36212, Unigene31721, Unigene11331, Unigene112, CL979.Contig3, CL979.Contig1, Unigene17270	ko04919	Endocrine system
Adipocytokine signaling pathway	Unigene33785, CL3443.Contig1, CL979.Contig3, CL979.Contig1	ko04920	Endocrine system
Insulin secretion	Unigene33785, Unigene11331, CL979.Contig3, CL979.Contig1, CL5287.Contig1	ko04911	Endocrine system
Thyroid hormone synthesis	Unigene10157, Unigene27634, Unigene11857, Unigene11331	ko04918	Endocrine system
PPAR signaling pathway	CL1683.Contig3, CL1683.Contig5, CL2638.Contig2	ko03320	Endocrine system
Estrogen signaling pathway	Unigene10157, Unigene35344, Unigene27634	ko04915	Endocrine system
Progesterone-mediated oocyte maturation	Unigene10157, Unigene27634	ko04914	Endocrine system
Glucagon signaling pathway	Unigene33785, CL979.Contig3, CL979.Contig1	ko04922	Endocrine system
Renin-angiotensin system	Unigene49236	ko04614	Endocrine system
Insulin signaling pathway	Unigene32292, Unigene35501, Unigene44161	ko04910	Endocrine system
Oxytocin signaling pathway	Unigene44161	ko04921	Endocrine system
GnRH signaling pathway	CL6599.Contig1	ko04912	Endocrine system
Proximal tubule bicarbonate reclamation	Unigene12705, Unigene15693, Unigene38622, Unigene11331, Unigene17070	ko04964	Excretory system
Aldosterone-regulated sodium reabsorption	Unigene11331	ko04960	Excretory system
Endocrine and other factor-regulated calcium reabsorption	Unigene11331	ko04961	Excretory system
Antigen processing and presentation	Unigene10157, Unigene35344, Unigene27634, Unigene11857, Unigene41750	ko04612	Immune system
NOD-like receptor signaling pathway	Unigene10157, Unigene27634	ko04621	Immune system
Hematopoietic cell lineage	Unigene15456, Unigene47891l, Unigene15457	ko04640	Immune system
B cell receptor signaling pathway	Unigene15456, Unigene47891, Unigene15457	ko04662	Immune system
Platelet activation	Unigene44161	ko04611	Immune system
Fc gamma R-mediated phagocytosis	CL6599.Contig1, CL4852.Contig1	ko04666	Immune system
Long-term potentiation	Unigene44161	ko04720	Nervous system
GABAergic synapse	CL3399.Contig2	ko04727	Nervous system
Dopaminergic synapse	Unigene44161	ko04728	Nervous system
Glutamatergic synapse	CL6599.Contig1, Unigene5252, CL3399.Contig2	ko04724	Nervous system
Phototransduction	CL6217.Contig3, CL41.Contig2	ko04744	Sensory system
Olfactory transduction	CL6217.Contig3, CL41.Contig2	ko04740	Sensory system
Inflammatory mediator regulation of TRP channels	Unigene44161	ko04750	Sensory system

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ISSN: 1471-2164

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