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Table 3 The greatest functional classification differences between CK and LS

From: Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

NO Pathway DEGs genes (119) / All genes (28890) with pathway annotation P value Pathway ID
1 Proximal tubule bicarbonate reclamation 4 (4.2%) / 53 (0.18%) 1.239607e-05 ko04964
2 Fructose and mannose metabolism 5 (4.2%) / 98 (0.34%) 0.000239203 ko00051
3 Protein digestion and absorption 10 (8.4%) / 456 (1.58%) 0.000280083 ko04974
4 Bile secretion 7 (5.9%) / 226 (0.78%) 0.0003098698 ko04976
5 Amoebiasis 17 (14.3%) / 1195 (4.14%) 0.0004429313 ko05146
6 Antigen processing and presentation 5 (4.2%) / 113 (0.39%) 0.0004620034 ko04612
7 Protein processing in endoplasmic reticulum 9 (7.6%) / 455 (1.57%) 0.001166426 ko04141
8 Glycosphingolipid biosynthesis - lacto and neolacto series 4 (3.4%) / 94 (0.33%) 0.002007803 ko00601
9 Thyroid hormone signaling pathway 11 (9.2%) / 746 (2.58%) 0.003509184 ko04919
10 AMPK signaling pathway 8 (6.7%) / 465 (1.61%) 0.005048467 ko04152
11 Nitrogen metabolism 2 (1.7%) / 19 (0.07%) 0.005079646 ko00910
12 Vibrio cholerae infection 14 (11.8%) / 1170 (4.05%) 0.006652947 ko05110
13 Mineral absorption 5 (4.2%) / 214 (0.74%) 0.007464861 ko04978
14 Adipocytokine signaling pathway 4 (3.4%) / 153 (0.53%) 0.01119608 ko04920
15 ECM-receptor interaction 7 (5.9%) / 440 (1.52%) 0.01272333 ko04512
16 Toxoplasmosis 4 (3.4%) / 172 (0.6%) 0.01655378 ko05145
17 Insulin secretion 5 (4.2%) / 264 (0.91%) 0.01723485 ko04911
18 Thyroid hormone synthesis 4 (3.4%) / 195 (0.67%) 0.02489002 ko04918
19 PI3K-Akt signaling pathway 14 (11.8%) / 1386 (4.8%) 0.0255091 ko04151
20 Insulin resistance 4 (3.4%) /214 (0.74%) 0.0333897 ko04931