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Table 1 Statistics of the read alignments in the RNA-Seq study

From: Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Sample name

Raw reads

Clean reads

clean bases

Error rate (%)

Q20(%)

Q30(%)

GC content(%)

CK_R1

102,609,352

100,129,870

15.02G

0.01

97.57

93.83

52.22

CK_R2

102,837,492

100,135,724

15.02G

0.01

97.59

93.82

52.55

CK_R3

119,750,698

116,752,212

17.51G

0.01

97.66

93.98

52.15

SY_R1

108,004,232

104,861,548

15.73G

0.01

97.56

93.79

52.69

SY_R2

138,500,332

133,956,886

20.09G

0.01

97.65

93.97

52.72

SY_R3

108,136,544

104,207,142

15.63G

0.01

97.62

93.89

53.65